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X-RAY DIFFRACTION
Materials and Methods page
3RJS
  •   Crystallization Hide
    Crystallization Experiments
    pH 4.6
    Temperature 295.0
    Details 16% polyethylene glycol 4000, 0.2 M (NH4)2SO4, 0.1 M CH3COONa, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 75.03 α = 90
    b = 75.03 β = 90
    c = 85.08 γ = 120
     
    Space Group
    Space Group Name:    H 3 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR CCD 165 mm
    Details MIRRORS
    Collection Date 2007-05-23
     
    Diffraction Radiation
    Monochromator SI-111 CRYSTAL - DOUBLE CRYSTAL MONOCHROMATOR
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.2
    Wavelength 0.9184
    Site BESSY
    Beamline 14.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.5
    Resolution(Low) 51.62
    Number Reflections(Observed) 14931
    Percent Possible(Observed) 99.7
    R Merge I(Observed) 0.035
    B(Isotropic) From Wilson Plot 23.8
    Redundancy 6.1
     
    High Resolution Shell Details
    Resolution(High) 1.5
    Resolution(Low) 1.53
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.252
    Mean I Over Sigma(Observed) 6.2
    R-Sym I(Observed) 0.252
    Redundancy 6.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.5
    Resolution(Low) 18.756
    Cut-off Sigma(F) 1.36
    Number of Reflections(all) 14921
    Number of Reflections(Observed) 14929
    Number of Reflections(R-Free) 754
    Percent Reflections(Observed) 99.87
    R-Factor(Observed) 0.1938
    R-Work 0.1926
    R-Free 0.2186
     
    Temperature Factor Modeling
    Mean Isotropic B Value 26.147
    Anisotropic B[1][1] -0.33
    Anisotropic B[1][2] -0.16
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.33
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.49
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5
    Shell Resolution(Low) 1.6158
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2799
    R-Factor(R-Work) 0.2416
    R-Factor(R-Free) 0.3004
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6158
    Shell Resolution(Low) 1.7783
    Number of Reflections(R-Free) 183
    Number of Reflections(R-Work) 2775
    R-Factor(R-Work) 0.2148
    R-Factor(R-Free) 0.2135
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7783
    Shell Resolution(Low) 2.0353
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2830
    R-Factor(R-Work) 0.1993
    R-Factor(R-Free) 0.2219
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0353
    Shell Resolution(Low) 2.5633
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2840
    R-Factor(R-Work) 0.1946
    R-Factor(R-Free) 0.2078
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5633
    Shell Resolution(Low) 18.7577
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2931
    R-Factor(R-Work) 0.1776
    R-Factor(R-Free) 0.2099
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.08
    f_dihedral_angle_d 13.613
    f_angle_d 1.15
    f_bond_d 0.008
     
    Coordinate Error
    Luzzati ESD(Observed) 0.0
    Luzzati Sigma A(Observed) 0.0
    Luzzati Resolution Cutoff(Low) 0.0
    Luzzati ESD(R-Free Set) 0.0
    Luzzati Sigma A(R-Free Set) 0.0
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 714
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 113
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8_1060)
     
    Software
    refinement REFMAC version: 5.5.0109