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X-RAY DIFFRACTION
Materials and Methods page
3R6K
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 0.1 M Imidazole, 8.25% (w/v) PEG 8000, 1% (v/v) MPD, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 73.39 α = 90
    b = 100.28 β = 90
    c = 82.15 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 95
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2010-09-12
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-BM
    Wavelength List 1.0
    Site APS
    Beamline 22-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.6
    Resolution(Low) 24.45
    Number Reflections(Observed) 37085
    Percent Possible(Observed) 91.7
    B(Isotropic) From Wilson Plot 22.53
    Redundancy 5.9
     
    High Resolution Shell Details
    Resolution(High) 1.6
    Resolution(Low) 1.66
    Percent Possible(All) 61.2
    Mean I Over Sigma(Observed) 1.99
    R-Sym I(Observed) 0.395
    Redundancy 3.1
    Number Unique Reflections(All) 2432
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.6
    Resolution(Low) 24.446
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 36791
    Number of Reflections(Observed) 36791
    Number of Reflections(R-Free) 1844
    Percent Reflections(Observed) 91.28
    R-Factor(Observed) 0.2203
    R-Work 0.2194
    R-Free 0.2371
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model Isotropic, TLS
    Anisotropic B[1][1] 6.6823
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 9.8361
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -4.8471
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5999
    Shell Resolution(Low) 1.6431
    Number of Reflections(R-Free) 90
    Number of Reflections(R-Work) 1750
    R-Factor(R-Work) 0.3053
    R-Factor(R-Free) 0.3414
    Percent Reflections(Observed) 60.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6431
    Shell Resolution(Low) 1.6914
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 2414
    R-Factor(R-Work) 0.2741
    R-Factor(R-Free) 0.309
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6914
    Shell Resolution(Low) 1.746
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 2819
    R-Factor(R-Work) 0.2433
    R-Factor(R-Free) 0.3214
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.746
    Shell Resolution(Low) 1.8084
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2911
    R-Factor(R-Work) 0.2279
    R-Factor(R-Free) 0.2312
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8084
    Shell Resolution(Low) 1.8808
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2912
    R-Factor(R-Work) 0.2461
    R-Factor(R-Free) 0.3149
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8808
    Shell Resolution(Low) 1.9664
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2200
    R-Factor(R-Work) 0.4275
    R-Factor(R-Free) 0.4728
    Percent Reflections(Observed) 76.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9664
    Shell Resolution(Low) 2.07
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2925
    R-Factor(R-Work) 0.2283
    R-Factor(R-Free) 0.2525
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.07
    Shell Resolution(Low) 2.1996
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2913
    R-Factor(R-Work) 0.2283
    R-Factor(R-Free) 0.2569
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1996
    Shell Resolution(Low) 2.3693
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2476
    R-Factor(R-Work) 0.3163
    R-Factor(R-Free) 0.3446
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3693
    Shell Resolution(Low) 2.6075
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2938
    R-Factor(R-Work) 0.2103
    R-Factor(R-Free) 0.2585
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6075
    Shell Resolution(Low) 2.9842
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2966
    R-Factor(R-Work) 0.2123
    R-Factor(R-Free) 0.2322
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9842
    Shell Resolution(Low) 3.7576
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2805
    R-Factor(R-Work) 0.1934
    R-Factor(R-Free) 0.2147
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7576
    Shell Resolution(Low) 24.4488
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2918
    R-Factor(R-Work) 0.1709
    R-Factor(R-Free) 0.1641
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.061
    f_dihedral_angle_d 16.129
    f_angle_d 0.93
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2338
    Nucleic Acid Atoms 0
    Heterogen Atoms 41
    Solvent Atoms 228
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SERGUI
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHASER (2.1.4)
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building PHASER version: (2.1.4)
    data collection SERGUI