POP-OUT | CLOSE

An Information Portal to 111749 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
3R60
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Temperature 293.0
    Details 100 mM HEPES, 7.0, 90 mM Lithium Sulfate, 20% 1,2-Propanediol, 10 mM Ascorbic acid, 1 mM Ferrous Sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 49.68 α = 90
    b = 45.9 β = 93.5
    c = 74.69 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type NOIR-1
    Collection Date 2010-10-05
     
    Diffraction Radiation
    Monochromator SI(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 4.2.2
    Wavelength 1.2131
    Site ALS
    Beamline 4.2.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.8
    Resolution(Low) 21.9
    Number Reflections(Observed) 31230
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.125
    Redundancy 3.68
     
    High Resolution Shell Details
    Resolution(High) 1.8
    Resolution(Low) 1.9
    Percent Possible(All) 99.1
    R Merge I(Observed) 0.429
    Mean I Over Sigma(Observed) 2.5
    Redundancy 3.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.8
    Resolution(Low) 21.815
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 31184
    Number of Reflections(R-Free) 1499
    Percent Reflections(Observed) 99.24
    R-Factor(Observed) 0.2415
    R-Work 0.2393
    R-Free 0.2847
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 6.7356
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.8159
    Anisotropic B[2][2] -4.9875
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.7481
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8
    Shell Resolution(Low) 1.8581
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2692
    R-Factor(R-Work) 0.3011
    R-Factor(R-Free) 0.323
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8581
    Shell Resolution(Low) 1.9245
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2672
    R-Factor(R-Work) 0.2647
    R-Factor(R-Free) 0.3476
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9245
    Shell Resolution(Low) 2.0015
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2656
    R-Factor(R-Work) 0.2327
    R-Factor(R-Free) 0.2786
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0015
    Shell Resolution(Low) 2.0925
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2669
    R-Factor(R-Work) 0.2061
    R-Factor(R-Free) 0.2353
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0925
    Shell Resolution(Low) 2.2027
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2654
    R-Factor(R-Work) 0.2055
    R-Factor(R-Free) 0.2559
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2027
    Shell Resolution(Low) 2.3406
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2707
    R-Factor(R-Work) 0.2018
    R-Factor(R-Free) 0.2579
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3406
    Shell Resolution(Low) 2.5211
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2684
    R-Factor(R-Work) 0.2028
    R-Factor(R-Free) 0.2371
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5211
    Shell Resolution(Low) 2.7743
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.2126
    R-Factor(R-Free) 0.2592
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7743
    Shell Resolution(Low) 3.1747
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2703
    R-Factor(R-Work) 0.2245
    R-Factor(R-Free) 0.3076
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1747
    Shell Resolution(Low) 3.9958
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2741
    R-Factor(R-Work) 0.2281
    R-Factor(R-Free) 0.2521
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9958
    Shell Resolution(Low) 21.8162
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2819
    R-Factor(R-Work) 0.307
    R-Factor(R-Free) 0.371
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.065
    f_dihedral_angle_d 14.718
    f_angle_d 0.85
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2228
    Nucleic Acid Atoms 0
    Heterogen Atoms 37
    Solvent Atoms 181
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution EPMR
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.4_486)
    model building EPMR