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X-RAY DIFFRACTION
Materials and Methods page
3Q5E
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8
    Temperature 293.0
    Details 20% PEG3350 and 0.15 M ammonium phosphate dibasic, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 104.39 α = 90
    b = 133.55 β = 90
    c = 175.84 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2010-06-04
     
    Diffraction Radiation
    Monochromator Si111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE A1
    Wavelength List 0.987
    Site CHESS
    Beamline A1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 3
    Resolution(Low) 50
    Number Reflections(All) 49019
    Number Reflections(Observed) 48872
    Percent Possible(Observed) 99.7
     
    High Resolution Shell Details
    Resolution(High) 3.0
    Resolution(Low) 3.11
    Percent Possible(All) 99.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.013
    Resolution(Low) 42.544
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 48786
    Number of Reflections(Observed) 46452
    Number of Reflections(R-Free) 1890
    Percent Reflections(Observed) 94.24
    R-Factor(All) 0.2003
    R-Factor(Observed) 0.2003
    R-Work 0.1971
    R-Free 0.2731
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -6.9973
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -18.7807
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 25.778
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0131
    Shell Resolution(Low) 3.0946
    Number of Reflections(R-Free) 111
    Number of Reflections(R-Work) 2659
    R-Factor(R-Work) 0.2894
    R-Factor(R-Free) 0.3987
    Percent Reflections(Observed) 74.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0946
    Shell Resolution(Low) 3.1856
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 3085
    R-Factor(R-Work) 0.2433
    R-Factor(R-Free) 0.3679
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1856
    Shell Resolution(Low) 3.2884
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 3342
    R-Factor(R-Work) 0.2421
    R-Factor(R-Free) 0.321
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2884
    Shell Resolution(Low) 3.4059
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 3459
    R-Factor(R-Work) 0.2307
    R-Factor(R-Free) 0.3141
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4059
    Shell Resolution(Low) 3.5422
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 3493
    R-Factor(R-Work) 0.2199
    R-Factor(R-Free) 0.2941
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5422
    Shell Resolution(Low) 3.7033
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 3497
    R-Factor(R-Work) 0.2064
    R-Factor(R-Free) 0.2756
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7033
    Shell Resolution(Low) 3.8984
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 3425
    R-Factor(R-Work) 0.1986
    R-Factor(R-Free) 0.3011
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8984
    Shell Resolution(Low) 4.1425
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 3462
    R-Factor(R-Work) 0.1824
    R-Factor(R-Free) 0.2411
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1425
    Shell Resolution(Low) 4.462
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 3496
    R-Factor(R-Work) 0.1576
    R-Factor(R-Free) 0.2482
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.462
    Shell Resolution(Low) 4.9104
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 3545
    R-Factor(R-Work) 0.161
    R-Factor(R-Free) 0.2293
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.9104
    Shell Resolution(Low) 5.6196
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 3608
    R-Factor(R-Work) 0.1758
    R-Factor(R-Free) 0.262
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.6196
    Shell Resolution(Low) 7.0748
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 3677
    R-Factor(R-Work) 0.2093
    R-Factor(R-Free) 0.2761
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.0748
    Shell Resolution(Low) 42.5486
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 3814
    R-Factor(R-Work) 0.1956
    R-Factor(R-Free) 0.2491
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.086
    f_dihedral_angle_d 19.699
    f_angle_d 1.248
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 12820
    Nucleic Acid Atoms 0
    Heterogen Atoms 116
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Phenix/Phaser
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.4_486)
    model building Phenix/Phaser
    data collection ADSC version: Quantum