X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 293.0
Details 0.1 M Imidazole, 8.25% (w/v) PEG 8000, 1% (v/v) MPD, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 6.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 65.17 α = 90
b = 79.1 β = 99.54
c = 68.91 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 95
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2010-08-08
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.4 28.17 99.8 -- 0.04 -- 3.74 -- 135108 -3.0 -3.0 13.9
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.4 1.44 99.9 -- 0.672 2.32 3.69 9985

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.4 28.171 -- 0.0 135210 135108 6863 99.82 -- 0.1698 0.1689 0.1881 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.4 1.4159 4264 245 4264 0.2714 0.3076 -- 100.0
X Ray Diffraction 1.4159 1.4326 4207 250 4207 0.2576 0.2803 -- 100.0
X Ray Diffraction 1.4326 1.45 4276 219 4276 0.2552 0.2787 -- 100.0
X Ray Diffraction 1.45 1.4684 4268 238 4268 0.2437 0.2633 -- 100.0
X Ray Diffraction 1.4684 1.4877 4262 237 4262 0.2339 0.2645 -- 100.0
X Ray Diffraction 1.4877 1.5081 4205 255 4205 0.2277 0.2449 -- 100.0
X Ray Diffraction 1.5081 1.5296 4298 224 4298 0.2186 0.2448 -- 100.0
X Ray Diffraction 1.5296 1.5525 4273 216 4273 0.2126 0.2339 -- 100.0
X Ray Diffraction 1.5525 1.5767 4263 228 4263 0.2018 0.2237 -- 100.0
X Ray Diffraction 1.5767 1.6026 4289 222 4289 0.1936 0.2458 -- 100.0
X Ray Diffraction 1.6026 1.6302 4247 232 4247 0.1958 0.2313 -- 100.0
X Ray Diffraction 1.6302 1.6598 4251 241 4251 0.1849 0.2072 -- 100.0
X Ray Diffraction 1.6598 1.6918 4291 230 4291 0.1772 0.1869 -- 100.0
X Ray Diffraction 1.6918 1.7263 4271 221 4271 0.1738 0.1848 -- 100.0
X Ray Diffraction 1.7263 1.7638 4281 211 4281 0.1711 0.2134 -- 100.0
X Ray Diffraction 1.7638 1.8048 4292 224 4292 0.1635 0.1955 -- 100.0
X Ray Diffraction 1.8048 1.85 4274 228 4274 0.1563 0.163 -- 100.0
X Ray Diffraction 1.85 1.9 4270 233 4270 0.1588 0.1941 -- 100.0
X Ray Diffraction 1.9 1.9559 4230 245 4230 0.1564 0.1707 -- 100.0
X Ray Diffraction 1.9559 2.019 4307 220 4307 0.1561 0.1879 -- 100.0
X Ray Diffraction 2.019 2.0911 4311 208 4311 0.1563 0.1732 -- 100.0
X Ray Diffraction 2.0911 2.1748 4281 219 4281 0.1591 0.1806 -- 100.0
X Ray Diffraction 2.1748 2.2738 4251 241 4251 0.1586 0.1736 -- 100.0
X Ray Diffraction 2.2738 2.3936 4257 262 4257 0.1513 0.166 -- 100.0
X Ray Diffraction 2.3936 2.5435 4326 213 4326 0.1577 0.1682 -- 100.0
X Ray Diffraction 2.5435 2.7397 4276 220 4276 0.1681 0.1866 -- 100.0
X Ray Diffraction 2.7397 3.0151 4309 214 4309 0.1654 0.1797 -- 100.0
X Ray Diffraction 3.0151 3.4507 4326 217 4326 0.1619 0.1979 -- 100.0
X Ray Diffraction 3.4507 4.345 4305 240 4305 0.1469 0.1544 -- 100.0
X Ray Diffraction 4.345 28.1769 4386 210 4386 0.161 0.1704 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model Isotropic, TLS
Mean Isotropic B 23.204
Anisotropic B[1][1] -0.1027
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -2.7216
Anisotropic B[2][2] -1.3517
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.4544
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.087
f_dihedral_angle_d 15.061
f_angle_d 1.244
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4832
Nucleic Acid Atoms 0
Heterogen Atoms 145
Solvent Atoms 748

Software

Computing
Computing Package Purpose
SERGUI Data Collection
XDS Data Reduction (intensity integration)
XSCALE Data Reduction (data scaling)
PHASER (2.1.4) Structure Solution
PHENIX (phenix.refine: 1.6.4_486) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.6.4_486) refinement
PHASER version: (2.1.4) model building
SERGUI data collection