X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details 30% PEG8000,0.1M AMMONIUM SULPHATE, 0.1M IMIDAZOLE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 81.68 α = 90
b = 81.68 β = 90
c = 63.52 γ = 120
Symmetry
Space Group P 65

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU SATURN 944+ -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 20 99.9 0.168 -- -- 9.1 16366 16366 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.0 2.07 100.0 0.398 -- 4.5 8.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 19.619 -- 1.42 16365 16365 1631 99.93 0.1586 0.1586 0.1568 0.2179 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0 2.0227 -- 548 548 0.1841 0.1841 -- 100.0
X Ray Diffraction 2.0227 2.0465 -- 554 554 0.1977 0.1977 -- 100.0
X Ray Diffraction 2.0465 2.0715 -- 534 534 0.1662 0.1662 -- 100.0
X Ray Diffraction 2.0715 2.0976 -- 524 524 0.1705 0.1705 -- 100.0
X Ray Diffraction 2.0976 2.1252 -- 562 562 0.1727 0.1727 -- 100.0
X Ray Diffraction 2.1252 2.1543 -- 546 546 0.1798 0.1798 -- 100.0
X Ray Diffraction 2.1543 2.185 -- 546 546 0.1702 0.1702 -- 100.0
X Ray Diffraction 2.185 2.2176 -- 540 540 0.1584 0.1584 -- 100.0
X Ray Diffraction 2.2176 2.2522 -- 539 539 0.1623 0.1623 -- 100.0
X Ray Diffraction 2.2522 2.2891 -- 531 531 0.1607 0.1607 -- 100.0
X Ray Diffraction 2.2891 2.3285 -- 541 541 0.1484 0.1484 -- 100.0
X Ray Diffraction 2.3285 2.3708 -- 541 541 0.1509 0.1509 -- 100.0
X Ray Diffraction 2.3708 2.4163 -- 548 548 0.1557 0.1557 -- 100.0
X Ray Diffraction 2.4163 2.4655 -- 556 556 0.1558 0.1558 -- 100.0
X Ray Diffraction 2.4655 2.519 -- 523 523 0.1583 0.1583 -- 100.0
X Ray Diffraction 2.519 2.5775 -- 551 551 0.1559 0.1559 -- 100.0
X Ray Diffraction 2.5775 2.6418 -- 559 559 0.159 0.159 -- 100.0
X Ray Diffraction 2.6418 2.713 -- 538 538 0.1599 0.1599 -- 100.0
X Ray Diffraction 2.713 2.7927 -- 546 546 0.1597 0.1597 -- 100.0
X Ray Diffraction 2.7927 2.8825 -- 551 551 0.1654 0.1654 -- 100.0
X Ray Diffraction 2.8825 2.9852 -- 516 516 0.1553 0.1553 -- 100.0
X Ray Diffraction 2.9852 3.1043 -- 553 553 0.1547 0.1547 -- 100.0
X Ray Diffraction 3.1043 3.245 -- 550 550 0.1544 0.1544 -- 100.0
X Ray Diffraction 3.245 3.4152 -- 542 542 0.1348 0.1348 -- 99.0
X Ray Diffraction 3.4152 3.6279 -- 550 550 0.1453 0.1453 -- 100.0
X Ray Diffraction 3.6279 3.906 -- 549 549 0.1307 0.1307 -- 100.0
X Ray Diffraction 3.906 4.2954 -- 557 557 0.1191 0.1191 -- 100.0
X Ray Diffraction 4.2954 4.9084 -- 549 549 0.1213 0.1213 -- 100.0
X Ray Diffraction 4.9084 6.1522 -- 550 550 0.1479 0.1479 -- 100.0
X Ray Diffraction 6.1522 19.6196 -- 571 571 0.1814 0.1814 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model Isotropic
Anisotropic B[1][1] -0.7342
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.7342
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.9985
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.171
f_bond_d 0.009
f_chiral_restr 0.073
f_plane_restr 0.004
f_dihedral_angle_d 19.834
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1636
Nucleic Acid Atoms 0
Heterogen Atoms 40
Solvent Atoms 264

Software

Software
Software Name Purpose
CrystalClear data collection
AMoRE phasing
PHENIX refinement version: (phenix.refine: 1.5_2)
d*TREK data reduction
SCALA data scaling