X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details 30% PEG8000, 0.1M AMMONIUM SULPHATE, 0.1M IMIDAZOLE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 54.57 α = 90
b = 54.57 β = 90
c = 106.51 γ = 120
Symmetry
Space Group P 31 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU SATURN 944+ -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.63 20 100.0 0.107 -- -- 7.1 23624 23624 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.63 1.69 100.0 0.429 -- 4.0 6.64 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.63 20.0 -- 1.43 23582 23582 2325 100.0 0.1599 0.1599 0.1567 0.2102 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.63 1.6485 -- 760 760 0.3043 0.3043 -- 100.0
X Ray Diffraction 1.6485 1.6679 -- 758 758 0.2878 0.2878 -- 100.0
X Ray Diffraction 1.6679 1.6883 -- 797 797 0.2844 0.2844 -- 100.0
X Ray Diffraction 1.6883 1.7096 -- 779 779 0.2632 0.2632 -- 100.0
X Ray Diffraction 1.7096 1.7321 -- 737 737 0.263 0.263 -- 100.0
X Ray Diffraction 1.7321 1.7558 -- 800 800 0.2397 0.2397 -- 100.0
X Ray Diffraction 1.7558 1.7809 -- 749 749 0.2412 0.2412 -- 100.0
X Ray Diffraction 1.7809 1.8074 -- 783 783 0.2132 0.2132 -- 100.0
X Ray Diffraction 1.8074 1.8357 -- 786 786 0.1969 0.1969 -- 100.0
X Ray Diffraction 1.8357 1.8657 -- 764 764 0.175 0.175 -- 100.0
X Ray Diffraction 1.8657 1.8979 -- 792 792 0.1633 0.1633 -- 100.0
X Ray Diffraction 1.8979 1.9324 -- 770 770 0.1754 0.1754 -- 100.0
X Ray Diffraction 1.9324 1.9695 -- 775 775 0.1412 0.1412 -- 100.0
X Ray Diffraction 1.9695 2.0097 -- 784 784 0.1219 0.1219 -- 100.0
X Ray Diffraction 2.0097 2.0533 -- 763 763 0.1258 0.1258 -- 100.0
X Ray Diffraction 2.0533 2.101 -- 795 795 0.1386 0.1386 -- 100.0
X Ray Diffraction 2.101 2.1535 -- 769 769 0.1402 0.1402 -- 100.0
X Ray Diffraction 2.1535 2.2117 -- 773 773 0.1354 0.1354 -- 100.0
X Ray Diffraction 2.2117 2.2767 -- 800 800 0.1265 0.1265 -- 100.0
X Ray Diffraction 2.2767 2.35 -- 770 770 0.1232 0.1232 -- 100.0
X Ray Diffraction 2.35 2.4339 -- 784 784 0.1343 0.1343 -- 100.0
X Ray Diffraction 2.4339 2.5311 -- 784 784 0.1468 0.1468 -- 100.0
X Ray Diffraction 2.5311 2.6461 -- 795 795 0.1538 0.1538 -- 100.0
X Ray Diffraction 2.6461 2.7852 -- 801 801 0.1386 0.1386 -- 100.0
X Ray Diffraction 2.7852 2.9592 -- 797 797 0.138 0.138 -- 100.0
X Ray Diffraction 2.9592 3.1868 -- 790 790 0.1277 0.1277 -- 100.0
X Ray Diffraction 3.1868 3.5058 -- 803 803 0.1236 0.1236 -- 100.0
X Ray Diffraction 3.5058 4.0094 -- 818 818 0.1195 0.1195 -- 100.0
X Ray Diffraction 4.0094 5.0373 -- 821 821 0.1166 0.1166 -- 100.0
X Ray Diffraction 5.0373 19.6718 -- 885 885 0.1676 0.1676 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model ISOTROPIC
Anisotropic B[1][1] -0.5756
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.5756
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.1511
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 17.891
f_bond_d 0.008
f_angle_d 1.182
f_chiral_restr 0.08
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1636
Nucleic Acid Atoms 0
Heterogen Atoms 21
Solvent Atoms 422

Software

Software
Software Name Purpose
CrystalClear data collection
AMoRE phasing
PHENIX refinement version: (phenix.refine: 1.5_2)
d*TREK data reduction
SCALA data scaling