POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3PHI
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 293.0
    Details 25% PEG 8000, 0.1M BIS-TRIS, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 44.99 α = 90
    b = 48.39 β = 97.61
    c = 123 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 110
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2008-11-01
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSRRC BEAMLINE BL13C1
    Wavelength List 0.9762
    Site NSRRC
    Beamline BL13C1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.04
    Resolution(Low) 30
    Number Reflections(Observed) 32329
    Percent Possible(Observed) 96.9
    R Merge I(Observed) 0.037
    Redundancy 4.4
     
    High Resolution Shell Details
    Resolution(High) 2.05
    Resolution(Low) 2.12
    Percent Possible(All) 90.9
    R Merge I(Observed) 0.131
    Mean I Over Sigma(Observed) 10.3
    R-Sym I(Observed) 0.131
    Redundancy 4.2
    Number Unique Reflections(All) 2979
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.04
    Resolution(Low) 28.23
    Number of Reflections(all) 32345
    Number of Reflections(Observed) 30682
    Number of Reflections(R-Free) 1646
    Percent Reflections(Observed) 96.17
    R-Factor(Observed) 0.20896
    R-Work 0.20774
    R-Free 0.23124
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 34.245
    Anisotropic B[1][1] 4.15
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.91
    Anisotropic B[2][2] -2.18
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.21
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.043
    Shell Resolution(Low) 2.096
    Number of Reflections(R-Free) 102
    Number of Reflections(R-Work) 1873
    R-Factor(R-Work) 0.208
    R-Factor(R-Free) 0.221
    Percent Reflections(Observed) 80.35
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 7.306
    r_scbond_it 4.975
    r_mcangle_it 3.156
    r_mcbond_it 1.931
    r_gen_planes_refined 0.018
    r_chiral_restr 0.112
    r_dihedral_angle_4_deg 18.736
    r_dihedral_angle_3_deg 16.001
    r_dihedral_angle_2_deg 35.637
    r_dihedral_angle_1_deg 5.945
    r_angle_refined_deg 1.656
    r_bond_refined_d 0.015
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4054
    Nucleic Acid Atoms 0
    Heterogen Atoms 120
    Solvent Atoms 165
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution AMoRE
    Structure Refinement REFMAC 5.4.0077
     
    Software
    refinement REFMAC version: 5.4.0077
    model building AMoRE
    data collection HKL-2000