POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3PHH
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.5
    Temperature 293.0
    Details 30% PEG 8000, 0.1M BIS-TRIS, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 46.37 α = 90
    b = 62.8 β = 90
    c = 84.38 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 110
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2008-12-05
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSRRC BEAMLINE BL13B1
    Wavelength List 1.0000
    Site NSRRC
    Beamline BL13B1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.42
    Resolution(Low) 30
    Number Reflections(Observed) 47067
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.054
    Redundancy 7.0
     
    High Resolution Shell Details
    Resolution(High) 1.42
    Resolution(Low) 1.47
    Percent Possible(All) 98.6
    R Merge I(Observed) 0.467
    Mean I Over Sigma(Observed) 4.1
    R-Sym I(Observed) 0.467
    Redundancy 6.7
    Number Unique Reflections(All) 4566
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.42
    Resolution(Low) 24.85
    Number of Reflections(all) 47133
    Number of Reflections(Observed) 44685
    Number of Reflections(R-Free) 2382
    Percent Reflections(Observed) 99.83
    R-Factor(Observed) 0.19884
    R-Work 0.1973
    R-Free 0.22728
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 16.377
    Anisotropic B[1][1] 0.05
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.48
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.53
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.421
    Shell Resolution(Low) 1.458
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 3225
    R-Factor(R-Work) 0.261
    R-Factor(R-Free) 0.302
    Percent Reflections(Observed) 98.54
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.514
    r_scbond_it 2.16
    r_mcangle_it 1.309
    r_mcbond_it 0.681
    r_gen_planes_refined 0.007
    r_chiral_restr 0.063
    r_dihedral_angle_4_deg 6.751
    r_dihedral_angle_3_deg 10.661
    r_dihedral_angle_2_deg 34.054
    r_dihedral_angle_1_deg 3.597
    r_angle_refined_deg 1.419
    r_bond_refined_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2038
    Nucleic Acid Atoms 0
    Heterogen Atoms 12
    Solvent Atoms 375
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution AMoRE
    Structure Refinement REFMAC 5.5.0062
     
    Software
    refinement REFMAC version: 5.5.0062
    model building AMoRE
    data collection HKL-2000