X-RAY DIFFRACTION Experimental Data & Validation


Lost? View more X-Ray Crystallographic info.

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.15
Details 20%(w/v) polyethylene glycol 3350, 0.2M ammonium nitrate, 0.02%(w/v) sodium azide, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 81.61 α = 90
b = 121 β = 92.12
c = 133.38 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 110
Diffraction Detector
Detector Diffraction Type Details Collection Date
AREA DETECTOR ADSC QUANTUM 315r -- 2010-07-24
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 AUSTRALIAN SYNCHROTRON MX2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.35 52.57 97.4 -- 0.102 -- 3.0 104678 104678 -- -- 36.09
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.35 2.48 98.6 0.528 0.528 1.4 3.0 15476

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.35 52.567 -- 0.0 -- 104678 2100 97.15 -- 0.1723 0.1712 0.222 Random, Thin shells
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.35 2.434 -- 210 10377 0.2016 0.2545 -- 99.0
X Ray Diffraction 2.434 2.5314 -- 210 10315 0.1861 0.2617 -- 98.0
X Ray Diffraction 2.5314 2.6466 -- 210 10339 0.1843 0.2573 -- 98.0
X Ray Diffraction 2.6466 2.7861 -- 210 10319 0.1862 0.2397 -- 98.0
X Ray Diffraction 2.7861 2.9607 -- 210 10297 0.1872 0.2486 -- 98.0
X Ray Diffraction 2.9607 3.1893 -- 210 10254 0.1842 0.2484 -- 97.0
X Ray Diffraction 3.1893 3.5101 -- 210 10265 0.1748 0.2147 -- 97.0
X Ray Diffraction 3.5101 4.0179 -- 210 10210 0.1577 0.2323 -- 97.0
X Ray Diffraction 4.0179 5.0615 -- 210 10163 0.1385 0.186 -- 96.0
X Ray Diffraction 5.0615 52.5797 -- 210 10039 0.1495 0.1772 -- 94.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 36.1
Anisotropic B[1][1] -0.0875
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.2392
Anisotropic B[2][2] 0.3073
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.2198
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 12.219
f_plane_restr 0.002
f_chiral_restr 0.044
f_angle_d 0.654
f_bond_d 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 20437
Nucleic Acid Atoms 0
Heterogen Atoms 127
Solvent Atoms 565

Software

Computing
Computing Package Purpose
ADSC Quantum Data Collection
MOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHENIX (phenix.refine: 1.6.1_357) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.6.1_357) refinement
ADSC version: Quantum data collection