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X-RAY DIFFRACTION
Materials and Methods page
3PG9
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    Temperature 293.15
    Details 20%(w/v) polyethylene glycol 3350, 0.2M ammonium nitrate, 0.02%(w/v) sodium azide, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 81.61 α = 90
    b = 121 β = 92.12
    c = 133.38 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 110
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type ADSC QUANTUM 315r
    Collection Date 2010-07-24
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength List 0.9537
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.35
    Resolution(Low) 52.57
    Number Reflections(All) 104678
    Number Reflections(Observed) 104678
    Percent Possible(Observed) 97.4
    B(Isotropic) From Wilson Plot 36.09
    Redundancy 3.0
     
    High Resolution Shell Details
    Resolution(High) 2.35
    Resolution(Low) 2.48
    Percent Possible(All) 98.6
    R Merge I(Observed) 0.528
    Mean I Over Sigma(Observed) 1.4
    R-Sym I(Observed) 0.528
    Redundancy 3.0
    Number Unique Reflections(All) 15476
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.35
    Resolution(Low) 52.567
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 104678
    Number of Reflections(R-Free) 2100
    Percent Reflections(Observed) 97.15
    R-Factor(Observed) 0.1723
    R-Work 0.1712
    R-Free 0.222
    R-Free Selection Details Random, Thin shells
     
    Temperature Factor Modeling
    Mean Isotropic B Value 36.1
    Anisotropic B[1][1] -0.0875
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.2392
    Anisotropic B[2][2] 0.3073
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.2198
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.35
    Shell Resolution(Low) 2.434
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10377
    R-Factor(R-Work) 0.2016
    R-Factor(R-Free) 0.2545
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.434
    Shell Resolution(Low) 2.5314
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10315
    R-Factor(R-Work) 0.1861
    R-Factor(R-Free) 0.2617
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5314
    Shell Resolution(Low) 2.6466
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10339
    R-Factor(R-Work) 0.1843
    R-Factor(R-Free) 0.2573
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6466
    Shell Resolution(Low) 2.7861
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10319
    R-Factor(R-Work) 0.1862
    R-Factor(R-Free) 0.2397
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7861
    Shell Resolution(Low) 2.9607
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10297
    R-Factor(R-Work) 0.1872
    R-Factor(R-Free) 0.2486
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9607
    Shell Resolution(Low) 3.1893
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10254
    R-Factor(R-Work) 0.1842
    R-Factor(R-Free) 0.2484
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1893
    Shell Resolution(Low) 3.5101
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10265
    R-Factor(R-Work) 0.1748
    R-Factor(R-Free) 0.2147
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5101
    Shell Resolution(Low) 4.0179
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10210
    R-Factor(R-Work) 0.1577
    R-Factor(R-Free) 0.2323
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0179
    Shell Resolution(Low) 5.0615
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10163
    R-Factor(R-Work) 0.1385
    R-Factor(R-Free) 0.186
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.0615
    Shell Resolution(Low) 52.5797
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 10039
    R-Factor(R-Work) 0.1495
    R-Factor(R-Free) 0.1772
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.219
    f_plane_restr 0.002
    f_chiral_restr 0.044
    f_angle_d 0.654
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 20437
    Nucleic Acid Atoms 0
    Heterogen Atoms 127
    Solvent Atoms 565
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Refinement PHENIX (phenix.refine: 1.6.1_357)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.1_357)
    data collection ADSC version: Quantum