POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3P14
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 283.0
    Details 10% (w/v) PEG 8000, 0.1M HEPES pH 6.0, 0.2M sodium acetate , VAPOR DIFFUSION, HANGING DROP, temperature 283K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 83.24 α = 90
    b = 164.88 β = 115.97
    c = 92.01 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PAL/PLS BEAMLINE 6C1
    Wavelength List 1.23999
    Site PAL/PLS
    Beamline 6C1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.5
    Resolution(Low) 50
    Number Reflections(Observed) 76165
    Percent Possible(Observed) 98.2
    R Merge I(Observed) 0.112
    Redundancy 3.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.51
    Resolution(Low) 45.78
    Number of Reflections(Observed) 70988
    Number of Reflections(R-Free) 3751
    Percent Reflections(Observed) 97.74
    R-Factor(Observed) 0.18859
    R-Work 0.18506
    R-Free 0.25551
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 32.388
    Anisotropic B[1][1] -0.02
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.01
    Anisotropic B[2][2] 0.02
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.01
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.505
    Shell Resolution(Low) 2.57
    Number of Reflections(R-Free) 256
    Number of Reflections(R-Work) 4988
    R-Factor(R-Work) 0.263
    R-Factor(R-Free) 0.351
    Percent Reflections(Observed) 93.16
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 4.175
    r_scbond_it 2.551
    r_mcangle_it 1.646
    r_mcbond_it 0.851
    r_gen_planes_refined 0.008
    r_chiral_restr 0.137
    r_dihedral_angle_4_deg 18.993
    r_dihedral_angle_3_deg 20.782
    r_dihedral_angle_2_deg 37.435
    r_dihedral_angle_1_deg 6.629
    r_angle_refined_deg 1.825
    r_bond_refined_d 0.019
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 13160
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 451
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution MolRep
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building MolRep
    data collection HKL-2000