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X-RAY DIFFRACTION
Materials and Methods page
3OZ1
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8
    Temperature 293.0
    Details 25% PEG 400, 0.1M Sodium Citrate, 0.1M Tris, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 113.59 α = 90
    b = 114.63 β = 90
    c = 92.96 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 70
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2010-05-17
     
    Diffraction Radiation
    Monochromator Si (111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength List 0.94
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 3
    Resolution(Low) 92.9
    Number Reflections(All) 11909
    Number Reflections(Observed) 11333
    Percent Possible(Observed) 95.2
    B(Isotropic) From Wilson Plot 78.37
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.0
    Resolution(Low) 60.93
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 11909
    Number of Reflections(Observed) 11333
    Number of Reflections(R-Free) 575
    R-Factor(Observed) 0.1949
    R-Work 0.1917
    R-Free 0.2569
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 85.03
    Anisotropic B[1][1] 4.1053
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -17.3415
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 13.2362
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0
    Shell Resolution(Low) 3.29
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2707
    R-Factor(R-Work) 0.1996
    R-Factor(R-Free) 0.2801
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 21.25
    t_omega_torsion 2.56
    t_angle_deg 1.12
    t_bond_d 0.01
     
    Coordinate Error
    Luzzati ESD(Observed) 0.419
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3386
    Nucleic Acid Atoms 0
    Heterogen Atoms 184
    Solvent Atoms 9
     
     
  •   Software and Computing Hide
    Computing
    Data Collection DNA
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement BUSTER 2.9.2
     
    Software
    refinement BUSTER version: 2.9.2
    model building PHASER
    data collection DNA