X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 8.5
Temperature 293.0
Details 10% PEG 4000, 9% Isopropanol, 0.1M Ammonium Sulfate, 0.1M Tris/Cl-, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 108.63 α = 90
b = 98.28 β = 99.68
c = 205.26 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2009-10-31
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-ID 0.82656 APS 22-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.68 50 94.8 -- 0.08 -- 3.4 -- 97150 1.0 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.68 49.733 -- 1.34 -- 97150 4867 94.8 -- 0.1997 0.1967 0.2563 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.68 2.7134 -- 11 270 0.3116 0.3373 -- 7.0
X Ray Diffraction 2.7134 2.7453 -- 19 530 0.3339 0.251 -- 14.0
X Ray Diffraction 2.7453 2.7788 -- 40 803 0.3578 0.4039 -- 21.0
X Ray Diffraction 2.7788 2.814 -- 63 1127 0.3438 0.4475 -- 30.0
X Ray Diffraction 2.814 2.851 -- 66 1551 0.3606 0.4184 -- 41.0
X Ray Diffraction 2.851 2.8901 -- 96 1957 0.3315 0.3776 -- 52.0
X Ray Diffraction 2.8901 2.9313 -- 98 2367 0.3397 0.4131 -- 62.0
X Ray Diffraction 2.9313 2.9751 -- 157 2655 0.3244 0.3673 -- 72.0
X Ray Diffraction 2.9751 3.0216 -- 159 2937 0.3049 0.3733 -- 78.0
X Ray Diffraction 3.0216 3.0711 -- 171 3246 0.2988 0.3464 -- 85.0
X Ray Diffraction 3.0711 3.1241 -- 207 3422 0.2868 0.3572 -- 92.0
X Ray Diffraction 3.1241 3.1809 -- 184 3579 0.2827 0.3684 -- 95.0
X Ray Diffraction 3.1809 3.242 -- 197 3642 0.2704 0.3367 -- 98.0
X Ray Diffraction 3.242 3.3082 -- 175 3714 0.2601 0.3175 -- 98.0
X Ray Diffraction 3.3082 3.3801 -- 195 3755 0.2385 0.3194 -- 99.0
X Ray Diffraction 3.3801 3.4587 -- 189 3745 0.2245 0.2961 -- 99.0
X Ray Diffraction 3.4587 3.5452 -- 184 3776 0.2113 0.256 -- 99.0
X Ray Diffraction 3.5452 3.641 -- 173 3786 0.1941 0.2751 -- 100.0
X Ray Diffraction 3.641 3.7481 -- 194 3795 0.1896 0.2617 -- 100.0
X Ray Diffraction 3.7481 3.869 -- 211 3745 0.1817 0.2312 -- 100.0
X Ray Diffraction 3.869 4.0073 -- 228 3744 0.1693 0.2492 -- 100.0
X Ray Diffraction 4.0073 4.1676 -- 206 3750 0.1606 0.245 -- 100.0
X Ray Diffraction 4.1676 4.3572 -- 190 3793 0.1453 0.2162 -- 100.0
X Ray Diffraction 4.3572 4.5868 -- 186 3799 0.1435 0.2037 -- 100.0
X Ray Diffraction 4.5868 4.8739 -- 221 3773 0.1372 0.2053 -- 100.0
X Ray Diffraction 4.8739 5.2499 -- 206 3765 0.131 0.214 -- 100.0
X Ray Diffraction 5.2499 5.7775 -- 187 3830 0.1464 0.2113 -- 100.0
X Ray Diffraction 5.7775 6.6118 -- 227 3785 0.1609 0.2336 -- 100.0
X Ray Diffraction 6.6118 8.3239 -- 213 3817 0.1715 0.2409 -- 99.0
X Ray Diffraction 8.3239 49.7412 -- 214 3825 0.2082 0.2226 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model Overall
Mean Isotropic B 57.3
Anisotropic B[1][1] 2.981
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 5.7775
Anisotropic B[2][2] 2.2145
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -5.1954
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_chiral_restr 0.034
f_dihedral_angle_d 14.653
f_angle_d 0.534
f_bond_d 0.002
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 24218
Nucleic Acid Atoms 0
Heterogen Atoms 1067
Solvent Atoms 523

Software

Computing
Computing Package Purpose
APS SER-CAT MARCCD Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
Phaser Structure Solution
PHENIX (phenix.refine: 1.5_2) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.5_2) refinement
Phaser model building
APS version: SER-CAT MARCCD data collection