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X-RAY DIFFRACTION
Materials and Methods page
3MUP
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7.5
    Temperature 293.15
    Details 25% PEG 3350, 0.1M HEPES pH 7.5, 0.2M Litium Sulphate; Drop volume: 0.3ul; Protein proportion: 67%; Protein concentration: 10 mg/ml, VAPOR DIFFUSION, SITTING DROP, temperature 293.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 71.63 α = 90
    b = 79.79 β = 92.48
    c = 98.41 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 70
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2009-11-06
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength List 0.94
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.6
    Resolution(Low) 53.27
    Number Reflections(All) 17109
    Number Reflections(Observed) 15911
    Percent Possible(Observed) 93.3
    R Merge I(Observed) 0.093
    B(Isotropic) From Wilson Plot 55.24
    Redundancy 2.3
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.74
    Percent Possible(All) 96.3
    R Merge I(Observed) 0.369
    Mean I Over Sigma(Observed) 2.0
    Redundancy 2.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.6
    Resolution(Low) 53.27
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 15911
    Number of Reflections(Observed) 15907
    Number of Reflections(R-Free) 798
    Percent Reflections(Observed) 92.7
    R-Factor(Observed) 0.229
    R-Work 0.2259
    R-Free 0.2876
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 45.83
    Anisotropic B[1][1] -4.4624
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 9.983
    Anisotropic B[2][2] -2.2137
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 6.676
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.78
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2804
    R-Factor(R-Work) 0.205
    R-Factor(R-Free) 0.2961
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 21.51
    t_omega_torsion 2.4
    t_angle_deg 1.06
    t_bond_d 0.009
     
    Coordinate Error
    Luzzati ESD(Observed) 0.358
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3325
    Nucleic Acid Atoms 0
    Heterogen Atoms 152
    Solvent Atoms 78
     
     
  •   Software and Computing Hide
    Computing
    Data Collection DNA
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution molrep
    Structure Refinement BUSTER 2.9.2
     
    Software
    refinement REFMAC version: 5.5.0109
    model building molrep
    data collection DNA