POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3MME
  •   Crystallization Hide
    Crystallization Experiments
    pH 4.5
    Temperature 293.0
    Details 1.96M ammonium sulfate, 0.2 M NaCl, 0.1M acetate pH 4.5 with 3% 1,6 diaminohexane, VAPOR DIFFUSION, HANGING DROP, temperature 293.00K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 191.96 α = 90
    b = 230.8 β = 90
    c = 82.1 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2009-10-14
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-ID
    Wavelength 1.00
    Site APS
    Beamline 22-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 3.97
    Resolution(Low) 50
    Number Reflections(Observed) 5511
    Percent Possible(Observed) 93.3
    R Merge I(Observed) 0.237
    Redundancy 5.2
     
    High Resolution Shell Details
    Resolution(High) 4.0
    Resolution(Low) 4.14
    Percent Possible(All) 82.5
    R Merge I(Observed) 0.556
    Mean I Over Sigma(Observed) 1.5
    R-Sym I(Observed) 0.515
    Redundancy 2.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.97
    Resolution(Low) 49.45
    Cut-off Sigma(F) 1.34
    Number of Reflections(R-Free) 739
    Percent Reflections(Observed) 91.1
    R-Factor(Observed) 0.259
    R-Work 0.256
    R-Free 0.317
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -13.1622
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 26.54
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -13.3778
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.973
    Shell Resolution(Low) 4.2797
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2211
    R-Factor(R-Work) 0.2941
    R-Factor(R-Free) 0.3254
    Percent Reflections(Observed) 73.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2797
    Shell Resolution(Low) 4.7101
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2768
    R-Factor(R-Work) 0.2488
    R-Factor(R-Free) 0.3175
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7101
    Shell Resolution(Low) 5.3909
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2853
    R-Factor(R-Work) 0.233
    R-Factor(R-Free) 0.2964
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3909
    Shell Resolution(Low) 6.7892
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2974
    R-Factor(R-Work) 0.2472
    R-Factor(R-Free) 0.3061
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.7892
    Shell Resolution(Low) 49.4564
    Number of Reflections(R-Free) 166
    Number of Reflections(R-Work) 3194
    R-Factor(R-Work) 0.2342
    R-Factor(R-Free) 0.3085
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.048
    f_dihedral_angle_d 16.898
    f_angle_d 0.743
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 9959
    Nucleic Acid Atoms 0
    Heterogen Atoms 81
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.5_2)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.5_2)
    model building PHASER
    data collection HKL-2000