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X-RAY DIFFRACTION
Materials and Methods page
3LIS
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 289.0
    Details 0.1M malate-MES-Tris (MMT), 20% PEG 1500, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 49.01 α = 90
    b = 29.53 β = 101.91
    c = 64.38 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2009-04-07
     
    Diffraction Radiation
    Monochromator Double crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength List 0.9795
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2
    Resolution(Low) 50
    Number Reflections(Observed) 12439
    Percent Possible(Observed) 99.2
    Redundancy 3.3
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.11
    Percent Possible(All) 99.7
    R Merge I(Observed) 0.276
    Mean I Over Sigma(Observed) 4.1
    Redundancy 3.4
    Number Unique Reflections(All) 1821
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.0
    Resolution(Low) 31.5
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 12432
    Number of Reflections(Observed) 11784
    Number of Reflections(R-Free) 648
    Percent Reflections(Observed) 99.05
    R-Factor(Observed) 0.209
    R-Work 0.207
    R-Free 0.246
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 33.417
    Anisotropic B[1][1] -1.55
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 1.15
    Anisotropic B[2][2] 1.42
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.6
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0
    Shell Resolution(Low) 2.052
    Number of Reflections(R-Free) 48
    Number of Reflections(R-Work) 858
    R-Factor(R-Work) 0.24
    R-Factor(R-Free) 0.29
    Percent Reflections(Observed) 99.78
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 8.19
    r_scbond_it 6.251
    r_mcangle_it 5.599
    r_mcbond_it 4.4
    r_gen_planes_refined 0.005
    r_chiral_restr 0.069
    r_dihedral_angle_4_deg 18.176
    r_dihedral_angle_3_deg 14.39
    r_dihedral_angle_2_deg 32.234
    r_dihedral_angle_1_deg 4.117
    r_angle_refined_deg 1.061
    r_bond_refined_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1568
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 88
     
     
  •   Software and Computing Hide
    Computing
    Data Collection GDA
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0072
     
    Software
    data extraction pdb_extract version: 3.005
    refinement REFMAC5
    molecular replacement Phaser version: 2.1.4
    data processing SCALA version: 3.3.9