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X-RAY DIFFRACTION
Materials and Methods page
3JWO
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION
    pH 8
    Temperature 293.0
    Details 5.3% PEG8000, 0.2M Calcium acetate, 0.1M imidazole, pH 8.0, VAPOR DIFFUSION, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 190 α = 90
    b = 190 β = 90
    c = 103.3 γ = 90
     
    Space Group
    Space Group Name:    P 41 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR scanner 300 mm plate
    Collection Date 2009-02-13
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-ID
    Wavelength List 1.00
    Site APS
    Beamline 22-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 3.5
    Resolution(Low) 50
    Number Reflections(Observed) 20271
    Percent Possible(Observed) 87.4
    R Merge I(Observed) 0.217
    Redundancy 2.3
     
    High Resolution Shell Details
    Resolution(High) 3.5
    Resolution(Low) 3.63
    Percent Possible(All) 41.8
    R Merge I(Observed) 0.553
    Mean I Over Sigma(Observed) 1.3
    Redundancy 1.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.51
    Resolution(Low) 41.09
    Cut-off Sigma(F) 0.11
    Number of Reflections(Observed) 20271
    Number of Reflections(R-Free) 1842
    Percent Reflections(Observed) 83.8
    R-Factor(Observed) 0.258
    R-Work 0.257
    R-Free 0.273
     
    Temperature Factor Modeling
    Mean Isotropic B Value 141.66
    Anisotropic B[1][1] -21.939
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -21.939
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 43.878
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.51
    Shell Resolution(Low) 3.604
    Number of Reflections(R-Free) 75
    Number of Reflections(R-Work) 714
    R-Factor(R-Work) 0.354
    R-Factor(R-Free) 0.4
    Percent Reflections(Observed) 43.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.604
    Shell Resolution(Low) 3.71
    Number of Reflections(R-Free) 80
    Number of Reflections(R-Work) 876
    R-Factor(R-Work) 0.333
    R-Factor(R-Free) 0.391
    Percent Reflections(Observed) 53.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.71
    Shell Resolution(Low) 3.829
    Number of Reflections(R-Free) 110
    Number of Reflections(R-Work) 1087
    R-Factor(R-Work) 0.319
    R-Factor(R-Free) 0.324
    Percent Reflections(Observed) 65.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.829
    Shell Resolution(Low) 3.966
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 1245
    R-Factor(R-Work) 0.301
    R-Factor(R-Free) 0.329
    Percent Reflections(Observed) 75.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.966
    Shell Resolution(Low) 4.125
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 1403
    R-Factor(R-Work) 0.275
    R-Factor(R-Free) 0.275
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.125
    Shell Resolution(Low) 4.312
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1499
    R-Factor(R-Work) 0.262
    R-Factor(R-Free) 0.242
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.312
    Shell Resolution(Low) 4.539
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 1575
    R-Factor(R-Work) 0.235
    R-Factor(R-Free) 0.259
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.539
    Shell Resolution(Low) 4.823
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 1607
    R-Factor(R-Work) 0.22
    R-Factor(R-Free) 0.227
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.823
    Shell Resolution(Low) 5.195
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 1615
    R-Factor(R-Work) 0.223
    R-Factor(R-Free) 0.228
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.195
    Shell Resolution(Low) 5.717
    Number of Reflections(R-Free) 166
    Number of Reflections(R-Work) 1649
    R-Factor(R-Work) 0.232
    R-Factor(R-Free) 0.252
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.717
    Shell Resolution(Low) 6.541
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 1645
    R-Factor(R-Work) 0.247
    R-Factor(R-Free) 0.29
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.541
    Shell Resolution(Low) 8.23
    Number of Reflections(R-Free) 169
    Number of Reflections(R-Work) 1700
    R-Factor(R-Work) 0.25
    R-Factor(R-Free) 0.268
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 8.23
    Shell Resolution(Low) 41.091
    Number of Reflections(R-Free) 184
    Number of Reflections(R-Work) 1814
    R-Factor(R-Work) 0.24
    R-Factor(R-Free) 0.263
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.051
    f_dihedral_angle_d 14.425
    f_angle_d 0.861
    f_bond_d 0.004
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7433
    Nucleic Acid Atoms 0
    Heterogen Atoms 164
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) HKL
    Structure Solution AMoRE
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    data extraction pdb_extract version: 3.005
    refinement phenix
    molecular replacement AMORE
    data processing HKL