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Materials and Methods page
3JWD
  •   Crystallization Hide
    Crystallization Experiments
    pH 9.5
    Temperature 293.0
    Details 4.5 % PEG 8000, 01M CHES, pH 9.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 83.11 α = 90
    b = 172.95 β = 90
    c = 193.14 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR scanner 300 mm plate
    Collection Date 2006-02-02
     
    Diffraction Radiation
    Monochromator SILICON CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-ID
    Wavelength 1.00
    Site APS
    Beamline 22-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.61
    Resolution(Low) 50
    Number Reflections(Observed) 59657
    Percent Possible(Observed) 69.7
    R Merge I(Observed) 0.107
    B(Isotropic) From Wilson Plot 56.15
    Redundancy 5.6
     
    High Resolution Shell Details
    Resolution(High) 2.61
    Resolution(Low) 2.7
    Percent Possible(All) 17.2
    R Merge I(Observed) 0.579
    Mean I Over Sigma(Observed) 1.38
    R-Sym I(Observed) 0.475
    Redundancy 2.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.61
    Resolution(Low) 43.86
    Number of Reflections(Observed) 54419
    Number of Reflections(R-Free) 5512
    Percent Reflections(Observed) 63.8
    R-Work 0.201
    R-Free 0.275
     
    Temperature Factor Modeling
    Mean Isotropic B Value 114.42
    Anisotropic B[1][1] 34.67
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.46
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -33.22
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 8.1
    f_angle_d 0.35
    f_bond_d 0.0
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 14969
    Nucleic Acid Atoms 0
    Heterogen Atoms 278
    Solvent Atoms 450
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution AMORE
    Structure Refinement PHENIX (CCI APPS 2007_04_06_1210)
     
    Software
    refinement PHENIX version: (CCI APPS 2007_04_06_1210)
    model building AMORE