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X-RAY DIFFRACTION
Materials and Methods page
3JSY
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.5
    Temperature 295.0
    Details KSCN, PEG4000, NaAcetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 57 α = 90
    b = 70.08 β = 90
    c = 97.96 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR CCD 165 mm
    Details Multilayer mirror
    Collection Date 2009-04-01
     
    Diffraction Radiation
    Monochromator Bent diamond crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type MAX II BEAMLINE I911-5
    Wavelength List 0.90778
    Site MAX II
    Beamline I911-5
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.6
    Resolution(Low) 20
    Number Reflections(Observed) 50801
    Percent Possible(Observed) 92.5
    R Merge I(Observed) 0.056
    Redundancy 4.7
     
    High Resolution Shell Details
    Resolution(High) 1.6
    Resolution(Low) 1.7
    Percent Possible(All) 85.0
    R Merge I(Observed) 0.38
    Mean I Over Sigma(Observed) 4.45
    Redundancy 4.7
    Number Unique Reflections(All) 7327
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method Solved with MAD and refined against native data set
    reflnsShellList 1.6
    Resolution(Low) 15.0
    Number of Reflections(all) 52013
    Number of Reflections(Observed) 49365
    Number of Reflections(R-Free) 2648
    Percent Reflections(Observed) 99.2
    R-Factor(All) 0.229
    R-Factor(Observed) 0.18412
    R-Work 0.1816
    R-Free 0.23321
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 29.389
    Anisotropic B[1][1] -0.56
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.83
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.27
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6
    Shell Resolution(Low) 1.641
    Number of Reflections(Observed) 3560
    Number of Reflections(R-Free) 213
    Number of Reflections(R-Work) 3560
    R-Factor(R-Work) 0.225
    R-Factor(R-Free) 0.309
    Percent Reflections(Observed) 99.87
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 15.384
    r_sphericity_free 18.563
    r_rigid_bond_restr 3.519
    r_bond_refined_d 0.003
    r_angle_refined_deg 0.929
    r_dihedral_angle_1_deg 3.576
    r_dihedral_angle_2_deg 29.983
    r_dihedral_angle_3_deg 10.868
    r_dihedral_angle_4_deg 12.533
    r_chiral_restr 0.065
    r_gen_planes_refined 0.004
    r_mcbond_it 3.065
    r_mcangle_it 4.709
    r_scbond_it 5.002
    r_scangle_it 7.659
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3207
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 392
     
     
  •   Software and Computing Hide
    Computing
    Data Collection mar
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution Phenix
    Structure Refinement REFMAC 5.5.0072
     
    Software
    refinement REFMAC version: 5.5.0072
    model building Phenix
    data collection mar