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ELECTRON MICROSCOPY
Materials and Methods page
3J1Z
  •   EM Refinement Details Hide
    3D Reconstruction
    Software Package(s) EMIP, SPARX
    Reconstruction Method IHRSR
     
    EM Map-Model Fitting & Refinement
    Refinement Space REAL
    Fitting Procedure MDFF
     
    EM Image Reconstruction Statistics
    Actual Pixel Size 2.735
    Effective Resolution 13.0
    CTF Correction Method Corrected throughout the reconstruction cycle
    Other Details CRYSTAL CELL PARAMETERS WERE A=57.5, B=34.0, C=100.0, ALPHA=90, BETA=90, GAMMA=85.3.
     
    Electron Microscope Sample
    Sample Concentration (mg/ml) 0.5
    Sample pH 7.0
    Sample Support Details holey carbon grid
    Sample Vitrification Details Blot for 2-5 seconds before plunging into liquid ethane (Gatan cryoplunger)
    Sample Aggregation State 2D CRYSTAL
    Name of Sample YiiP from Shewanella oneidensis in DOPG lipids
     
    Data Acquisition
    Date of Experiment 2009-02-10
    Num of Micrographs-Images Used 19
    Temperature (Kelvin) 100.0
    Microscope Model FEI TECNAI F20
    Detector Type film
    Minimum Defocus (NM) 1600.0
    Maximum Defocus (NM) 3000.0
    Nominal CS 2.1
    Imaging Mode BRIGHTFIELD
    Electron Dose (electrons nm**-2) 10.0
    Illumination Mode FLOODBEAM
    Nominal Magnification 50000
    Calibrated Magnification 51190
    Source FEG
    Acceleration Voltage (KV) 200
     
    Biomolecule
    COM ID 1
    Name YiiP
    Type PROTEIN
    IPR ID IPR002524
    GO ID GO:0006829, GO:0016021