ELECTRON MICROSCOPY Experimental Data



Virus Particulars
Virus Host Category Virus Host Species Virus Host Growth Cell Virus Type Virus Isolate ICTVDB ID
VERTEBRATES Oryctolagus cuniculus -- VIRION STRAIN --
EM Sample
Sample Vitrification Details Blot for 3 seconds before plunging into liquid ethane.
Sample Aggregation State PARTICLE
Sample Reconstruction Method SINGLE PARTICLE
Name of Sample Wild Rabbit Hemorrhagic Disease Virus (strain HYD)
EM Data Acquisition
Date of Experiment 2011-01-22
Temperature (Kelvin) 85.0
Microscope Model FEI TITAN KRIOS
Detector Type GATAN ULTRASCAN 4000 (4k x 4k)
Minimum Defocus (nm) 1500.0
Maximum Defocus (nm) 2500.0
Minimum Tilt Angle (degrees) 0.0
Maximum Tilt Angle (degrees) 0.0
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Electron Dose (electrons per Å**-2) 20.0
Illumination Mode FLOOD BEAM
Nominal Magnification 96000
Calibrated Magnification 160770
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details --
3D Reconstruction
Software Package(s) EMAN, SPIDER
Reconstruction Method(s) --
EM Image Reconstruction Statistics
Number of Particles 26000
Other Details The final map was sharpened to 4.5 Angstrom with B factor -300 and then filtered to 5.0 Angstrom (details about the particle: the particles were selected using an automatic selection program FindEM).
Effective Resolution 6.5
EM Map-Model Fitting and Refinement
Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Fitting Software
REAL OTHER -- -- -- --
REAL FLEXIBLE FIT -- -- -- --
REAL FLEXIBLE FIT -- -- -- --