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X-RAY DIFFRACTION
Materials and Methods page
3H53
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    pH 4.1
    Temperature 293.0
    Details PEG3350, citric acid, Bis-Tris propane, pH 4.1, vapor diffusion, hanging drop, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 153.53 α = 90
    b = 114.26 β = 96.11
    c = 68.41 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU RAXIS IV++
    Details Osmic Blue
    Collection Date 2008-05-12
     
    Diffraction Radiation
    Monochromator Osmic Blue
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH3R
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.01
    Resolution(Low) 50
    Number Reflections(Observed) 77785
    Percent Possible(Observed) 99.3
    B(Isotropic) From Wilson Plot 39.9
    Redundancy 9.9
     
    High Resolution Shell Details
    Resolution(High) 2.01
    Resolution(Low) 2.08
    Percent Possible(All) 93.0
    Mean I Over Sigma(Observed) 3.2
    R-Sym I(Observed) 0.61
    Redundancy 8.2
    Number Unique Reflections(All) 7283
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.01
    Resolution(Low) 50.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 77775
    Number of Reflections(R-Free) 3916
    Percent Reflections(Observed) 99.5
    R-Factor(Observed) 0.163
    R-Work 0.161
    R-Free 0.194
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 29.358
    Anisotropic B[1][1] 0.78
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 3.62
    Anisotropic B[2][2] -1.85
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.84
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.01
    Shell Resolution(Low) 2.06
    Number of Reflections(R-Free) 290
    Number of Reflections(R-Work) 5069
    R-Factor(R-Work) 0.259
    R-Factor(R-Free) 0.282
    Percent Reflections(Observed) 93.44
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 4.299
    r_scbond_it 2.947
    r_mcangle_it 2.952
    r_mcbond_it 2.079
    r_gen_planes_refined 0.004
    r_chiral_restr 0.072
    r_dihedral_angle_4_deg 18.136
    r_dihedral_angle_3_deg 13.364
    r_dihedral_angle_2_deg 34.706
    r_dihedral_angle_1_deg 5.598
    r_angle_refined_deg 1.048
    r_bond_refined_d 0.007
     
    Coordinate Error
    Luzzati ESD(Observed) 0.133
    Luzzati ESD(R-Free Set) 0.124
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6162
    Nucleic Acid Atoms 0
    Heterogen Atoms 339
    Solvent Atoms 735
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution AMoRE
    Structure Refinement REFMAC 5.5.0070
     
    Software
    data extraction pdb_extract version: 3.005
    refinement REFMAC5 version: 5.5.0070
    molecular replacement AMORE
    data processing HKL