X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7
Temperature 290.0
Details BaCl2, MPD, NaCacodylate , pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 65.2 α = 90
b = 23.8 β = 110.01
c = 37.41 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD OXFORD SAPPHIRE CCD multigraded optics --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SEALED TUBE OXFORD DIFFRACTION ENHANCED ULTRA 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 19.96 93.22 0.052 -- -- 2.7 2518 2351 1.0 1.0 31.247
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.3 2.36 93.22 0.21 -- 3.21 2.6 461

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.3 19.956 -- -- 2351 2351 101 93.22 0.264 0.264 0.26 0.349 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 31.247
Anisotropic B[1][1] -2.25
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.97
Anisotropic B[2][2] 3.16
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.57
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_refined 0.006
r_xyhbond_nbd_refined 0.325
r_nbtor_refined 0.316
r_bond_refined_d 0.008
r_angle_refined_deg 1.822
r_chiral_restr 0.066
r_nbd_refined 0.193
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 0
Nucleic Acid Atoms 404
Heterogen Atoms 5
Solvent Atoms 36

Software

Software
Software Name Purpose
REFMAC refinement
PDB_EXTRACT data extraction version: 1.401
Crysalis data collection version: Red
Crysalis data reduction version: Red
Crysalis data scaling version: Red
MOLREP phasing