X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 9
Temperature 294.0
Details 100mM Tris-HCl, pH9.0, 0.4M sodium dihydrogen phosphate, 1.2M dipotassium hydrogen phosphate, 10mM magnesium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 294K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 94.36 α = 90
b = 94.36 β = 90
c = 197.42 γ = 90
Symmetry
Space Group P 41 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 -- 2006-01-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PAL/PLS BEAMLINE 4A 1.0000 PAL/PLS 4A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 20 100.0 0.089 -- -- -- -- 40500 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.3 2.38 100.0 -- 0.44 5.1 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.3 20.0 -- 0.0 -- 36294 4007 99.84 -- 0.221 0.215 0.277 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3 2.359 -- 255 2625 0.25 0.351 -- 99.79
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 37.035
Anisotropic B[1][1] 1.62
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.62
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -3.25
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 2.765
r_scbond_it 1.622
r_mcangle_it 1.189
r_mcbond_it 0.683
r_symmetry_hbond_refined 0.187
r_bond_refined_d 0.01
r_angle_refined_deg 1.314
r_dihedral_angle_1_deg 7.246
r_dihedral_angle_2_deg 36.166
r_dihedral_angle_3_deg 18.92
r_dihedral_angle_4_deg 19.356
r_chiral_restr 0.098
r_gen_planes_refined 0.004
r_nbd_refined 0.198
r_nbtor_refined 0.299
r_xyhbond_nbd_refined 0.153
r_symmetry_vdw_refined 0.235
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4423
Nucleic Acid Atoms 0
Heterogen Atoms 20
Solvent Atoms 458

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL Data Reduction (data scaling)
PHASE Structure Solution
REFMAC 5.2.0019 Structure Refinement
Software
Software Name Purpose
pdb_extract version: 3.006 data extraction
REFMAC5 version: 5.2.0019 refinement
HKL data processing