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X-RAY DIFFRACTION
Materials and Methods page
3FL9
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 5.5
    Temperature 298.0
    Details 13 % PEG 3350, 0.2M CaCl2, 0.1M MES, 1% ethanol, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 67.93 α = 90
    b = 67.61 β = 90.12
    c = 167 γ = 90
     
    Space Group
    Space Group Name:    P 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type Bruker Platinum 135
    Details Montel multilayer
    Collection Date 2008-05-23
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type BRUKER AXS MICROSTAR
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.4
    Resolution(Low) 30
    Number Reflections(All) 59401
    Number Reflections(Observed) 53699
    Percent Possible(Observed) 90.1
    B(Isotropic) From Wilson Plot 34.6
    Redundancy 4.7
     
    High Resolution Shell Details
    Resolution(High) 2.4
    Resolution(Low) 2.5
    Percent Possible(All) 72.5
    Mean I Over Sigma(Observed) 4.9
    R-Sym I(Observed) 0.281
    Redundancy 2.7
    Number Unique Reflections(All) 4944
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.4
    Resolution(Low) 29.948
    Cut-off Sigma(F) 0.06
    Number of Reflections(Observed) 53699
    Number of Reflections(R-Free) 2051
    Percent Reflections(Observed) 90.09
    R-Factor(Observed) 0.24
    R-Work 0.237
    R-Free 0.309
    R-Free Selection Details random with consideration of twin law h, -k, -l
     
    Temperature Factor Modeling
    Mean Isotropic B Value 31.136
    Anisotropic B[1][1] -4.628
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.09
    Anisotropic B[2][2] -4.972
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -17.389
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4
    Shell Resolution(Low) 2.4414
    Number of Reflections(R-Free) 75
    Number of Reflections(R-Work) 1904
    R-Factor(R-Work) 0.2981
    R-Factor(R-Free) 0.4209
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4414
    Shell Resolution(Low) 2.4857
    Number of Reflections(R-Free) 85
    Number of Reflections(R-Work) 2104
    R-Factor(R-Work) 0.2874
    R-Factor(R-Free) 0.2904
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4857
    Shell Resolution(Low) 2.5335
    Number of Reflections(R-Free) 93
    Number of Reflections(R-Work) 2298
    R-Factor(R-Work) 0.2801
    R-Factor(R-Free) 0.318
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5335
    Shell Resolution(Low) 2.5852
    Number of Reflections(R-Free) 94
    Number of Reflections(R-Work) 2525
    R-Factor(R-Work) 0.2736
    R-Factor(R-Free) 0.3765
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5852
    Shell Resolution(Low) 2.6414
    Number of Reflections(R-Free) 110
    Number of Reflections(R-Work) 2702
    R-Factor(R-Work) 0.2865
    R-Factor(R-Free) 0.3522
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6414
    Shell Resolution(Low) 2.7028
    Number of Reflections(R-Free) 102
    Number of Reflections(R-Work) 2770
    R-Factor(R-Work) 0.2782
    R-Factor(R-Free) 0.3387
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7028
    Shell Resolution(Low) 2.7703
    Number of Reflections(R-Free) 104
    Number of Reflections(R-Work) 2728
    R-Factor(R-Work) 0.2768
    R-Factor(R-Free) 0.3799
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7703
    Shell Resolution(Low) 2.8452
    Number of Reflections(R-Free) 105
    Number of Reflections(R-Work) 2744
    R-Factor(R-Work) 0.2707
    R-Factor(R-Free) 0.3601
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8452
    Shell Resolution(Low) 2.9288
    Number of Reflections(R-Free) 111
    Number of Reflections(R-Work) 2717
    R-Factor(R-Work) 0.2703
    R-Factor(R-Free) 0.3214
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9288
    Shell Resolution(Low) 3.0233
    Number of Reflections(R-Free) 101
    Number of Reflections(R-Work) 2676
    R-Factor(R-Work) 0.2646
    R-Factor(R-Free) 0.2992
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0233
    Shell Resolution(Low) 3.1312
    Number of Reflections(R-Free) 103
    Number of Reflections(R-Work) 2680
    R-Factor(R-Work) 0.2428
    R-Factor(R-Free) 0.3367
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1312
    Shell Resolution(Low) 3.2565
    Number of Reflections(R-Free) 106
    Number of Reflections(R-Work) 2689
    R-Factor(R-Work) 0.2464
    R-Factor(R-Free) 0.3323
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2565
    Shell Resolution(Low) 3.4045
    Number of Reflections(R-Free) 98
    Number of Reflections(R-Work) 2668
    R-Factor(R-Work) 0.2278
    R-Factor(R-Free) 0.3467
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4045
    Shell Resolution(Low) 3.5837
    Number of Reflections(R-Free) 105
    Number of Reflections(R-Work) 2681
    R-Factor(R-Work) 0.2201
    R-Factor(R-Free) 0.3024
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5837
    Shell Resolution(Low) 3.8078
    Number of Reflections(R-Free) 99
    Number of Reflections(R-Work) 2643
    R-Factor(R-Work) 0.2093
    R-Factor(R-Free) 0.2687
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8078
    Shell Resolution(Low) 4.1011
    Number of Reflections(R-Free) 107
    Number of Reflections(R-Work) 2667
    R-Factor(R-Work) 0.1912
    R-Factor(R-Free) 0.242
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1011
    Shell Resolution(Low) 4.5126
    Number of Reflections(R-Free) 98
    Number of Reflections(R-Work) 2662
    R-Factor(R-Work) 0.1783
    R-Factor(R-Free) 0.2684
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5126
    Shell Resolution(Low) 5.1627
    Number of Reflections(R-Free) 107
    Number of Reflections(R-Work) 2638
    R-Factor(R-Work) 0.1955
    R-Factor(R-Free) 0.2225
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1627
    Shell Resolution(Low) 6.4935
    Number of Reflections(R-Free) 108
    Number of Reflections(R-Work) 2652
    R-Factor(R-Work) 0.2512
    R-Factor(R-Free) 0.3793
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.4935
    Shell Resolution(Low) 29.9503
    Number of Reflections(R-Free) 95
    Number of Reflections(R-Work) 2545
    R-Factor(R-Work) 0.256
    R-Factor(R-Free) 0.3088
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 16.971
    f_plane_restr 0.004
    f_chiral_restr 0.053
    f_angle_d 0.836
    f_bond_d 0.004
     
    Coordinate Error
    Luzzati ESD(Observed) 0.495
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 10663
    Nucleic Acid Atoms 0
    Heterogen Atoms 176
    Solvent Atoms 371
     
     
  •   Software and Computing Hide
    Computing
    Data Collection PROTEUM PLUS
    Data Reduction (intensity integration) SAINT
    Data Reduction (data scaling) SADABS
    Structure Solution Phaser
    Structure Refinement PHENIX (phenix.refine)
     
    Software
    data extraction pdb_extract version: 3.006
    refinement phenix