X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.8 α = 90
b = 56.11 β = 106.47
c = 85.24 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE MAR scanner 345 mm plate mirrors 1999-05-29
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRL BEAMLINE BL9-1 0.98 SSRL BL9-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.53 18.8 70.2 0.038 0.038 -- 3.0 101134 92759 -- 2.0 12.42
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.53 1.57 41.4 0.195 0.195 5.15 2.1 3111

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.53 18.804 -- 1.99 -- 92759 2319 91.85 -- 0.1955 0.1938 0.2612 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.53 1.5612 -- 126 4935 0.1997 0.2536 -- 85.0
X Ray Diffraction 1.5612 1.5951 -- 132 5126 0.1947 0.3125 -- 89.0
X Ray Diffraction 1.5951 1.6322 -- 136 5295 0.1914 0.2624 -- 92.0
X Ray Diffraction 1.6322 1.673 -- 139 5430 0.1765 0.2608 -- 94.0
X Ray Diffraction 1.673 1.7182 -- 142 5529 0.1641 0.2622 -- 96.0
X Ray Diffraction 1.7182 1.7688 -- 143 5589 0.159 0.233 -- 97.0
X Ray Diffraction 1.7688 1.8258 -- 146 5673 0.1598 0.2513 -- 98.0
X Ray Diffraction 1.8258 1.891 -- 143 5584 0.195 0.2963 -- 96.0
X Ray Diffraction 1.891 1.9666 -- 144 5618 0.2131 0.269 -- 98.0
X Ray Diffraction 1.9666 2.056 -- 148 5759 0.179 0.2504 -- 99.0
X Ray Diffraction 2.056 2.1643 -- 147 5767 0.1589 0.235 -- 100.0
X Ray Diffraction 2.1643 2.2997 -- 73 2815 0.1734 0.273 -- 49.0
X Ray Diffraction 2.2997 2.4769 -- 146 5719 0.1612 0.2387 -- 99.0
X Ray Diffraction 2.4769 2.7254 -- 147 5738 0.1733 0.2177 -- 98.0
X Ray Diffraction 2.7254 3.1183 -- 147 5718 0.1813 0.2511 -- 98.0
X Ray Diffraction 3.1183 3.9228 -- 128 4992 0.1982 0.2269 -- 85.0
X Ray Diffraction 3.9228 18.8059 -- 132 5153 0.26 0.3253 -- 86.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.863
f_bond_d 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5231
Nucleic Acid Atoms 0
Heterogen Atoms 11
Solvent Atoms 995

Software

Computing
Computing Package Purpose
MAR345dtb Data Collection
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
MolRep Structure Solution
PHENIX (phenix.refine) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine) refinement
MolRep model building
MAR345dtb data collection