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X-RAY DIFFRACTION
Materials and Methods page
3EUB
  •   Crystallization Hide
    Crystallization Experiments
    Method batch
    pH 7.2
    Temperature 298.0
    Details PEG 8000, pH 7.2, batch, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 73.3 α = 96.88
    b = 133.18 β = 93.11
    c = 142.63 γ = 90.02
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR CCD 165 mm
    Collection Date 2008-03-20
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 31-ID
    Wavelength List 0.9793
    Site APS
    Beamline 31-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.6
    Resolution(Low) 141.42
    Number Reflections(Observed) 119504
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.668
    Number Unique Reflections(All) 5403
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.6
    Resolution(Low) 33.08
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 119504
    Number of Reflections(R-Free) 6008
    Percent Reflections(Observed) 72.66
    R-Factor(Observed) 0.217
    R-Work 0.214
    R-Free 0.268
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 13.895
    Anisotropic B[1][1] -0.45
    Anisotropic B[1][2] -0.07
    Anisotropic B[1][3] 0.03
    Anisotropic B[2][2] -1.89
    Anisotropic B[2][3] 0.68
    Anisotropic B[3][3] 2.5
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.668
    Number of Reflections(R-Free) 300
    Number of Reflections(R-Work) 5403
    R-Factor(R-Work) 0.265
    R-Factor(R-Free) 0.398
    Percent Reflections(Observed) 46.82
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.544
    r_scbond_it 1.553
    r_mcangle_it 1.034
    r_mcbond_it 0.615
    r_symmetry_hbond_refined 0.286
    r_bond_refined_d 0.015
    r_angle_refined_deg 1.659
    r_dihedral_angle_1_deg 6.806
    r_dihedral_angle_2_deg 39.84
    r_dihedral_angle_3_deg 17.897
    r_dihedral_angle_4_deg 20.034
    r_chiral_restr 0.107
    r_gen_planes_refined 0.005
    r_nbd_refined 0.235
    r_nbtor_refined 0.314
    r_xyhbond_nbd_refined 0.179
    r_symmetry_vdw_refined 0.385
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 37670
    Nucleic Acid Atoms 0
    Heterogen Atoms 400
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.2.0019
     
    Software
    data extraction pdb_extract version: 3.006
    refinement REFMAC5
    molecular replacement MOLREP