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X-RAY DIFFRACTION
Materials and Methods page
3BP1
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    Temperature 289.0
    Details 0.04M Sodium dihydrogen phosphate, 0.96M Di-potassium hydrogen phosphate, GTP, VAPOR DIFFUSION, HANGING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 71.52 α = 119.25
    b = 71.58 β = 110.18
    c = 71.51 γ = 99.58
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type SBC-3
    Details Mirrors
    Collection Date 2007-10-29
     
    Diffraction Radiation
    Monochromator Double crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-BM
    Wavelength List 0.9793
    Site APS
    Beamline 19-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.53
    Resolution(Low) 50
    Number Reflections(All) 149957
    Number Reflections(Observed) 149957
    Percent Possible(Observed) 94.1
    Redundancy 4.5
     
    High Resolution Shell Details
    Resolution(High) 1.53
    Resolution(Low) 1.58
    Percent Possible(All) 76.5
    Mean I Over Sigma(Observed) 2.4
    R-Sym I(Observed) 0.359
    Redundancy 3.9
    Number Unique Reflections(All) 12259
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 1.53
    Resolution(Low) 26.16
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 142270
    Number of Reflections(Observed) 142270
    Number of Reflections(R-Free) 7527
    Percent Reflections(Observed) 93.89
    R-Factor(All) 0.145
    R-Factor(Observed) 0.145
    R-Work 0.143
    R-Free 0.183
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 21.199
    Anisotropic B[1][1] -0.62
    Anisotropic B[1][2] -0.18
    Anisotropic B[1][3] -0.29
    Anisotropic B[2][2] 0.89
    Anisotropic B[2][3] 1.12
    Anisotropic B[3][3] 0.57
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.53
    Shell Resolution(Low) 1.57
    Number of Reflections(Observed) 1198
    Number of Reflections(R-Free) 396
    Number of Reflections(R-Work) 7702
    R-Factor(R-Work) 0.178
    R-Factor(R-Free) 0.258
    Percent Reflections(Observed) 68.98
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 4.446
    r_sphericity_free 6.274
    r_rigid_bond_restr 1.995
    r_scangle_it 4.393
    r_scbond_it 3.208
    r_mcangle_it 2.289
    r_mcbond_it 1.52
    r_nbd_refined 0.233
    r_gen_planes_refined 0.007
    r_chiral_restr 0.112
    r_dihedral_angle_4_deg 11.071
    r_dihedral_angle_3_deg 13.391
    r_dihedral_angle_2_deg 40.448
    r_dihedral_angle_1_deg 6.13
    r_angle_refined_deg 1.578
    r_bond_refined_d 0.015
    r_nbtor_refined 0.307
    r_xyhbond_nbd_refined 0.178
    r_metal_ion_refined 0.124
    r_symmetry_vdw_refined 0.226
    r_symmetry_hbond_refined 0.161
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8197
    Nucleic Acid Atoms 0
    Heterogen Atoms 94
    Solvent Atoms 1177
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SBC-COLLECT, HKL-3000
    Data Reduction (intensity integration) HKL-3000
    Data Reduction (data scaling) HKL-3000
    Structure Solution HKL-3000, SHELX, MLPHARE, RESOLVE, ARP/wARP
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019