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X-RAY DIFFRACTION
Materials and Methods page
3BMV
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.8
    Temperature 293.0
    Details 20% Ammonium sulfate, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 73.62 α = 90
    b = 96.02 β = 90
    c = 114.16 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 4
    Details Toroidal mirror
    Collection Date 2007-09-23
     
    Diffraction Radiation
    Monochromator Diamond (111), Ge(220)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-3
    Wavelength List 0.931
    Site ESRF
    Beamline ID14-3
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.6
    Resolution(Low) 49
    Number Reflections(All) 95798
    Number Reflections(Observed) 95798
    Percent Possible(Observed) 89.9
    R Merge I(Observed) 0.076
    B(Isotropic) From Wilson Plot 12.6
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 1.6
    Resolution(Low) 1.69
    Percent Possible(All) 57.2
    R Merge I(Observed) 0.184
    Mean I Over Sigma(Observed) 5.2
    R-Sym I(Observed) 0.221
    Redundancy 2.8
    Number Unique Reflections(All) 8663
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method FOURIER SYNTHESIS
    reflnsShellList 1.6
    Resolution(Low) 40.83
    Number of Reflections(all) 95798
    Number of Reflections(Observed) 95798
    Number of Reflections(R-Free) 4793
    Percent Reflections(Observed) 89.36
    R-Factor(Observed) 0.14332
    R-Work 0.14225
    R-Free 0.1633
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 10.867
    Anisotropic B[1][1] -0.06
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.09
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.03
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6
    Shell Resolution(Low) 1.642
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 3883
    R-Factor(R-Work) 0.154
    R-Factor(R-Free) 0.179
    Percent Reflections(Observed) 51.86
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 1.473
    r_scbond_it 1.02
    r_mcangle_it 0.633
    r_mcbond_it 0.36
    r_symmetry_hbond_refined 0.13
    r_symmetry_vdw_refined 0.178
    r_bond_refined_d 0.007
    r_angle_refined_deg 1.058
    r_dihedral_angle_1_deg 5.892
    r_dihedral_angle_2_deg 36.386
    r_dihedral_angle_3_deg 10.384
    r_dihedral_angle_4_deg 10.974
    r_chiral_restr 0.073
    r_gen_planes_refined 0.004
    r_nbd_refined 0.185
    r_nbtor_refined 0.308
    r_xyhbond_nbd_refined 0.097
    r_metal_ion_refined 0.064
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5334
    Nucleic Acid Atoms 0
    Heterogen Atoms 51
    Solvent Atoms 1022
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution REFMAC
    Structure Refinement REFMAC 5.3.0022
     
    Software
    refinement REFMAC version: 5.3.0022