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X-RAY DIFFRACTION
Materials and Methods page
2YQ3
  •   Crystallization Hide
    Crystallization Experiments
    pH 5
    Details 16% PEG 6000, 79 MM CITRIC BUFFER PH 5.0, 20MM MGSO4
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 160.74 α = 90
    b = 49.69 β = 90
    c = 136.42 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I24
    Wavelength 1.0341
    Site DIAMOND
    Beamline I24
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 1.5
    Resolution(High) 3.3
    Resolution(Low) 50
    Number Reflections(Observed) 17239
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.24
    B(Isotropic) From Wilson Plot 75.46
    Redundancy 4.9
     
    High Resolution Shell Details
    Resolution(High) 3.3
    Resolution(Low) 3.42
    Percent Possible(All) 99.8
    R Merge I(Observed) 0.92
    Mean I Over Sigma(Observed) 1.5
    Redundancy 4.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.29
    Resolution(Low) 47.48
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 17209
    Number of Reflections(R-Free) 873
    Percent Reflections(Observed) 99.29
    R-Factor(Observed) 0.2531
    R-Work 0.2526
    R-Free 0.2637
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 82.96
    Anisotropic B[1][1] -15.1136
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 7.7565
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 7.3571
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.29
    Shell Resolution(Low) 3.49
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2506
    R-Factor(R-Work) 0.2395
    R-Factor(R-Free) 0.206
    Percent Reflections(Observed) 99.29
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.007
    t_angle_deg 0.99
    t_omega_torsion 2.23
    t_other_torsion 3.11
     
    Coordinate Error
    Luzzati ESD(Observed) 0.885
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4083
    Nucleic Acid Atoms 0
    Heterogen Atoms 112
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution MOLREP
    Structure Refinement BUSTER 2.11.2
     
    Software
    refinement BUSTER version: 2.11.2
    model building MOLREP