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X-RAY DIFFRACTION
Materials and Methods page
2YQ2
  •   Crystallization Hide
    Crystallization Experiments
    pH 8
    Details 52.5% METHYL-2,4-PENTANEDIOL (MPD) AND 0.1 M TRIS PH 8.0
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 132.18 α = 90
    b = 47.59 β = 108.15
    c = 159.29 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
     
    Diffraction Radiation
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength 0.9796
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 1.7
    Resolution(High) 2.59
    Resolution(Low) 50
    Number Reflections(Observed) 29885
    Percent Possible(Observed) 97.0
    R Merge I(Observed) 0.11
    B(Isotropic) From Wilson Plot 66.73
    Redundancy 5.0
     
    High Resolution Shell Details
    Resolution(High) 2.59
    Resolution(Low) 2.68
    Percent Possible(All) 76.1
    R Merge I(Observed) 1.0
    Mean I Over Sigma(Observed) 1.7
    Redundancy 4.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 2.58
    Resolution(Low) 38.08
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 29867
    Number of Reflections(R-Free) 1506
    Percent Reflections(Observed) 98.85
    R-Factor(Observed) 0.2406
    R-Work 0.2399
    R-Free 0.2527
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 78.07
    Anisotropic B[1][1] 7.4158
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -14.5745
    Anisotropic B[2][2] -5.1856
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.2302
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.58
    Shell Resolution(Low) 2.67
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.2848
    R-Factor(R-Free) 0.2968
    Percent Reflections(Observed) 98.85
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.008
    t_angle_deg 1.08
    t_omega_torsion 2.71
    t_other_torsion 3.12
     
    Coordinate Error
    Luzzati ESD(Observed) 0.547
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5248
    Nucleic Acid Atoms 0
    Heterogen Atoms 84
    Solvent Atoms 48
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHENIX AUTOSOL
    Structure Refinement BUSTER 2.11.2
     
    Software
    refinement BUSTER version: 2.11.2
    model building PHENIX version: AUTOSOL