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X-RAY DIFFRACTION
Materials and Methods page
2YPR
  •   Crystallization Hide
    Crystallization Experiments
    Details 14% PEG3350, 5% GLYCEROL, 100 MM CITRATE PH 5.3
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 130.77 α = 90
    b = 130.77 β = 90
    c = 130.77 γ = 90
     
    Space Group
    Space Group Name:    P 43 3 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2012-09-26
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength 0.97950
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.64
    Resolution(Low) 75.5
    Number Reflections(Observed) 11808
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.09
    B(Isotropic) From Wilson Plot 102.82
    Redundancy 15.9
     
    High Resolution Shell Details
    Resolution(High) 2.64
    Resolution(Low) 2.77
    Percent Possible(All) 100.0
    Mean I Over Sigma(Observed) 2.0
    Redundancy 16.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.64
    Resolution(Low) 75.5
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 11771
    Number of Reflections(R-Free) 559
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.2162
    R-Work 0.2156
    R-Free 0.2272
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 87.06
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.64
    Shell Resolution(Low) 2.89
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2604
    R-Factor(R-Work) 0.237
    R-Factor(R-Free) 0.2269
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.008
    t_angle_deg 0.88
    t_omega_torsion 2.19
    t_other_torsion 3.04
     
    Coordinate Error
    Luzzati ESD(Observed) 0.449
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1484
    Nucleic Acid Atoms 0
    Heterogen Atoms 6
    Solvent Atoms 9
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement BUSTER 2.11.2
     
    Software
    refinement BUSTER version: 2.11.2
    model building PHASER