POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
2YPO
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details 0.1 M TRIS-HCL PH 7.5, 1.5 M AMMONIUM SULFATE, 12% V/V GLYCEROL
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 203.97 α = 90
    b = 203.97 β = 90
    c = 66.6 γ = 120
     
    Space Group
    Space Group Name:    P 32 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2011-10-19
     
    Diffraction Radiation
    Monochromator SI(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength 0.97948
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2
    Resolution(Low) 44.16
    Number Reflections(Observed) 106936
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.1
    Redundancy 5.3
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.11
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.47
    Mean I Over Sigma(Observed) 1.6
    R-Sym I(Observed) 0.47
    Redundancy 5.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.0
    Resolution(Low) 44.16
    Number of Reflections(Observed) 101510
    Number of Reflections(R-Free) 5325
    Percent Reflections(Observed) 99.83
    R-Factor(Observed) 0.13932
    R-Work 0.13829
    R-Free 0.1593
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 28.127
    Anisotropic B[1][1] 4.65
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 4.65
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -9.3
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0
    Shell Resolution(Low) 2.052
    Number of Reflections(R-Free) 418
    Number of Reflections(R-Work) 7404
    R-Factor(R-Work) 0.167
    R-Factor(R-Free) 0.204
    Percent Reflections(Observed) 99.81
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.006
    r_gen_planes_refined 0.013
    r_chiral_restr 0.138
    r_dihedral_angle_4_deg 19.011
    r_dihedral_angle_3_deg 14.161
    r_dihedral_angle_2_deg 34.655
    r_dihedral_angle_1_deg 6.287
    r_angle_other_deg 1.399
    r_angle_refined_deg 2.002
    r_bond_other_d 0.007
    r_bond_refined_d 0.023
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7037
    Nucleic Acid Atoms 0
    Heterogen Atoms 87
    Solvent Atoms 387
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) IMOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution CCP4
    Structure Refinement REFMAC 5.7.0029
     
    Software
    refinement REFMAC version: 5.7.0029
    model building CCP4