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X-RAY DIFFRACTION
Materials and Methods page
2YOO
  •   Crystallization Hide
    Crystallization Experiments
    pH 6
    Details 24% PEG 3350, 0.2 M MGCL2, 0.1 M MES, PH 6.0
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 56.68 α = 90
    b = 106.21 β = 90.67
    c = 126.54 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 110
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Details MIRRORS
    Collection Date 2012-10-19
     
    Diffraction Radiation
    Monochromator SI (111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.3.1
    Wavelength 1.11587
    Site ALS
    Beamline 8.3.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 1.5
    Resolution(High) 1.69
    Resolution(Low) 106.21
    Number Reflections(Observed) 156144
    Percent Possible(Observed) 93.5
    R Merge I(Observed) 0.09
    B(Isotropic) From Wilson Plot 17.3
    Redundancy 2.2
     
    High Resolution Shell Details
    Resolution(High) 1.69
    Resolution(Low) 1.78
    Percent Possible(All) 65.8
    R Merge I(Observed) 0.5
    Mean I Over Sigma(Observed) 1.5
    Redundancy 1.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.69
    Resolution(Low) 126.53
    Number of Reflections(Observed) 148275
    Number of Reflections(R-Free) 7821
    Percent Reflections(Observed) 93.35
    R-Factor(Observed) 0.16768
    R-Work 0.16497
    R-Free 0.21908
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 15.957
    Anisotropic B[1][1] -0.28
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.07
    Anisotropic B[2][2] 0.15
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.13
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.69
    Shell Resolution(Low) 1.734
    Number of Reflections(R-Free) 379
    Number of Reflections(R-Work) 7047
    R-Factor(R-Work) 0.328
    R-Factor(R-Free) 0.382
    Percent Reflections(Observed) 60.34
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 5.105
    r_scbond_it 3.318
    r_mcangle_it 1.961
    r_mcbond_it 1.239
    r_gen_planes_refined 0.012
    r_chiral_restr 0.139
    r_dihedral_angle_4_deg 18.883
    r_dihedral_angle_3_deg 13.421
    r_dihedral_angle_2_deg 29.137
    r_dihedral_angle_1_deg 6.212
    r_angle_refined_deg 1.985
    r_bond_refined_d 0.024
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 12307
    Nucleic Acid Atoms 0
    Heterogen Atoms 285
    Solvent Atoms 1793
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building MOLREP