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X-RAY DIFFRACTION
Materials and Methods page
2YOL
  •   Crystallization Hide
    Crystallization Experiments
    Details 20% (W/V) POLYETHYLENE GLYCOL (PEG)3350, 0.1 M HEPES, PH 7.4
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 118.7 α = 90
    b = 118.7 β = 90
    c = 66.3 γ = 120
     
    Space Group
    Space Group Name:    P 32 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 200
     
    Diffraction Detector
    Detector CCD (MX-225)
    Type MARRESEARCH
    Collection Date 2012-03-14
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.2
    Wavelength 0.91841
    Site BESSY
    Beamline 14.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 3.2
    Resolution(Low) 51.38
    Number Reflections(Observed) 9157
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.15
    Redundancy 9.7
     
    High Resolution Shell Details
    Resolution(High) 3.2
    Resolution(Low) 3.37
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.49
    Mean I Over Sigma(Observed) 4.5
    Redundancy 9.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.2
    Resolution(Low) 102.77
    Number of Reflections(Observed) 8685
    Number of Reflections(R-Free) 437
    Percent Reflections(Observed) 99.73
    R-Factor(Observed) 0.18849
    R-Work 0.18759
    R-Free 0.20681
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 51.529
    Anisotropic B[1][1] -0.6
    Anisotropic B[1][2] -0.3
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.6
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.9
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2
    Shell Resolution(Low) 3.283
    Number of Reflections(R-Free) 32
    Number of Reflections(R-Work) 629
    R-Factor(R-Work) 0.246
    R-Factor(R-Free) 0.276
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.342
    r_scbond_it 1.304
    r_mcangle_it 1.275
    r_mcbond_it 0.682
    r_gen_planes_refined 0.006
    r_chiral_restr 0.099
    r_dihedral_angle_4_deg 12.161
    r_dihedral_angle_3_deg 19.881
    r_dihedral_angle_2_deg 37.233
    r_dihedral_angle_1_deg 6.818
    r_angle_refined_deg 1.489
    r_bond_refined_d 0.013
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1629
    Nucleic Acid Atoms 0
    Heterogen Atoms 43
    Solvent Atoms 7
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER-MR
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building PHASER-MR