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X-RAY DIFFRACTION
Materials and Methods page
2YOK
  •   Crystallization Hide
    Crystallization Experiments
    Details 25% PEG 4000 AND 5 MM CACL2
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 56.73 α = 90
    b = 69.19 β = 90
    c = 90.57 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (MX-225)
    Type MARRESEARCH
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type LNLS BEAMLINE W01B-MX2
    Wavelength 1.46
    Site LNLS
    Beamline W01B-MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.67
    Resolution(Low) 45.3
    Number Reflections(Observed) 42070
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.09
    Redundancy 6.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.67
    Resolution(Low) 39.48
    Number of Reflections(Observed) 39796
    Number of Reflections(R-Free) 2115
    Percent Reflections(Observed) 99.77
    R-Factor(Observed) 0.13048
    R-Work 0.12895
    R-Free 0.16057
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 12.402
    Anisotropic B[1][1] 0.16
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.03
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.13
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.671
    Shell Resolution(Low) 1.714
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2859
    R-Factor(R-Work) 0.239
    R-Factor(R-Free) 0.234
    Percent Reflections(Observed) 98.36
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.007
    r_chiral_restr 0.093
    r_dihedral_angle_4_deg 18.14
    r_dihedral_angle_3_deg 11.79
    r_dihedral_angle_2_deg 36.522
    r_dihedral_angle_1_deg 6.471
    r_angle_other_deg 0.834
    r_angle_refined_deg 1.483
    r_bond_other_d 0.002
    r_bond_refined_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3158
    Nucleic Acid Atoms 0
    Heterogen Atoms 66
    Solvent Atoms 681
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement REFMAC 5.7.0029
     
    Software
    refinement REFMAC version: 5.7.0029