POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
2YNZ
  •   Crystallization Hide
    Crystallization Experiments
    Details 10% (W/V) PEG 10000, 200 MM MAGNESIUM NITRATE
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 44.69 α = 90
    b = 60.3 β = 90
    c = 135.59 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Collection Date 2007-03-21
     
    Diffraction Radiation
    Monochromator SI(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X10SA
    Wavelength 0.97620
    Site SLS
    Beamline X10SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.4
    Resolution(Low) 19.9
    Number Reflections(Observed) 71862
    Percent Possible(Observed) 98.8
    R Merge I(Observed) 0.07
    Redundancy 4.38
     
    High Resolution Shell Details
    Resolution(High) 1.4
    Resolution(Low) 1.49
    Percent Possible(All) 97.9
    R Merge I(Observed) 0.68
    Mean I Over Sigma(Observed) 1.97
    Redundancy 4.14
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.4
    Resolution(Low) 19.27
    Number of Reflections(Observed) 68259
    Number of Reflections(R-Free) 3598
    Percent Reflections(Observed) 98.83
    R-Factor(Observed) 0.17925
    R-Work 0.17647
    R-Free 0.2318
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 16.733
    Anisotropic B[1][1] 0.05
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.42
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.47
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.402
    Shell Resolution(Low) 1.438
    Number of Reflections(R-Free) 253
    Number of Reflections(R-Work) 4834
    R-Factor(R-Work) 0.334
    R-Factor(R-Free) 0.347
    Percent Reflections(Observed) 95.98
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_rigid_bond_restr 2.664
    r_scangle_it 12.755
    r_scbond_it 9.616
    r_mcangle_it 7.2
    r_mcbond_other 3.055
    r_mcbond_it 5.855
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.004
    r_chiral_restr 0.068
    r_dihedral_angle_4_deg 11.902
    r_dihedral_angle_3_deg 14.504
    r_dihedral_angle_2_deg 37.831
    r_dihedral_angle_1_deg 5.204
    r_angle_other_deg 0.959
    r_angle_refined_deg 1.099
    r_bond_other_d 0.001
    r_bond_refined_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2475
    Nucleic Acid Atoms 0
    Heterogen Atoms 16
    Solvent Atoms 351
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building MOLREP