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X-RAY DIFFRACTION
Materials and Methods page
2YNR
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details 0.4-0.9 M SODIUM CITRATE, 0.1 M HEPES BUFFER (PH 6.5-8.0) AND 10 MM DTT
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 78.12 α = 90
    b = 90.35 β = 90
    c = 97.13 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 300
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Collection Date 2010-09-02
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength 0.9536
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.3
    Resolution(High) 2.3
    Resolution(Low) 20.1
    Number Reflections(Observed) 30886
    Percent Possible(Observed) 99.2
    R Merge I(Observed) 0.13
    B(Isotropic) From Wilson Plot 44.39
    Redundancy 5.0
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 3.42
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.61
    Mean I Over Sigma(Observed) 2.3
    Redundancy 5.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 19.81
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 30842
    Number of Reflections(R-Free) 1552
    Percent Reflections(Observed) 99.07
    R-Factor(Observed) 0.2012
    R-Work 0.1997
    R-Free 0.2304
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 60.17
    Anisotropic B[1][1] -12.0979
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -4.9738
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 17.0718
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.38
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2855
    R-Factor(R-Work) 0.2014
    R-Factor(R-Free) 0.221
    Percent Reflections(Observed) 99.07
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.01
    t_angle_deg 1.06
    t_omega_torsion 2.42
    t_other_torsion 3.07
     
    Coordinate Error
    Luzzati ESD(Observed) 0.332
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3345
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 106
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution MOLREP
    Structure Refinement BUSTER 2.10.0
     
    Software
    refinement BUSTER version: 2.10.0
    model building MOLREP