X-RAY DIFFRACTION Experimental Data & Validation


Lost? View more X-Ray Crystallographic info.

Crystallization

Crystalization Experiments
Details 12% PEG1500

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 171.56 α = 90
b = 50.51 β = 103.99
c = 74.47 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 77
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD -- -- 2009-05-25
Diffraction Radiation
Monochromator Protocol
DOUBLE CRYSTAL SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 -- DIAMOND I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 49 96.6 0.06 -- -- 3.5 -- 55618 -- 2.0 13.09
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.9 81.6 0.1 -- 10.2 4.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SIRAS 1.8 49.015 -- 1.36 -- 55618 2824 96.37 -- 0.1898 0.188 0.2233 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.8311 -- 119 1989 0.1931 0.2582 -- 75.0
X Ray Diffraction 1.8311 1.8644 -- 117 2261 0.1942 0.2541 -- 82.0
X Ray Diffraction 1.8644 1.9002 -- 142 2349 0.1955 0.248 -- 88.0
X Ray Diffraction 1.9002 1.939 -- 153 2507 0.1982 0.23 -- 92.0
X Ray Diffraction 1.939 1.9812 -- 124 2613 0.2077 0.308 -- 97.0
X Ray Diffraction 1.9812 2.0273 -- 142 2725 0.2048 0.2817 -- 100.0
X Ray Diffraction 2.0273 2.078 -- 130 2761 0.198 0.2278 -- 100.0
X Ray Diffraction 2.078 2.1342 -- 139 2716 0.192 0.2505 -- 100.0
X Ray Diffraction 2.1342 2.197 -- 153 2732 0.187 0.2584 -- 100.0
X Ray Diffraction 2.197 2.2679 -- 125 2734 0.1985 0.2505 -- 100.0
X Ray Diffraction 2.2679 2.3489 -- 150 2697 0.1907 0.2394 -- 100.0
X Ray Diffraction 2.3489 2.443 -- 138 2745 0.1889 0.2073 -- 100.0
X Ray Diffraction 2.443 2.5541 -- 139 2750 0.1956 0.2387 -- 100.0
X Ray Diffraction 2.5541 2.6888 -- 148 2712 0.1946 0.216 -- 100.0
X Ray Diffraction 2.6888 2.8572 -- 160 2727 0.2073 0.2368 -- 100.0
X Ray Diffraction 2.8572 3.0778 -- 144 2746 0.2099 0.2456 -- 100.0
X Ray Diffraction 3.0778 3.3875 -- 148 2742 0.202 0.2181 -- 100.0
X Ray Diffraction 3.3875 3.8775 -- 154 2750 0.174 0.1819 -- 99.0
X Ray Diffraction 3.8775 4.8845 -- 155 2730 0.1471 0.1672 -- 99.0
X Ray Diffraction 4.8845 49.0333 -- 144 2808 0.1705 0.2007 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 13.1
Anisotropic B[1][1] -3.207
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.2424
Anisotropic B[2][2] -3.1393
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 6.3462
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.088
f_dihedral_angle_d 12.476
f_angle_d 1.22
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5039
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 403

Software

Computing
Computing Package Purpose
IMOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
SHARP Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
SHARP model building