X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details 400 MM (NH4)H2PO4

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 203.57 α = 90
b = 140.06 β = 99.08
c = 126.53 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL (PILATUS 6M) DECTRIS -- 2011-06-02
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA -- SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.96 46.9 99.6 0.01 -- -- 3.8 -- 249028 -- 1.0 22.28
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.96 2.19 99.6 0.08 -- 1.0 3.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.96 46.903 -- 1.42 -- 239406 2294 95.78 -- 0.1595 0.1591 0.2011 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9609 2.0036 -- 120 12058 0.2593 0.2862 -- 78.0
X Ray Diffraction 2.0036 2.0502 -- 138 13761 0.2356 0.3124 -- 89.0
X Ray Diffraction 2.0502 2.1014 -- 136 14212 0.2121 0.2243 -- 92.0
X Ray Diffraction 2.1014 2.1583 -- 138 14470 0.1995 0.2371 -- 94.0
X Ray Diffraction 2.1583 2.2218 -- 144 14718 0.1968 0.2327 -- 95.0
X Ray Diffraction 2.2218 2.2935 -- 144 14802 0.1888 0.238 -- 96.0
X Ray Diffraction 2.2935 2.3754 -- 143 14981 0.1764 0.2379 -- 97.0
X Ray Diffraction 2.3754 2.4706 -- 147 15090 0.1739 0.2323 -- 98.0
X Ray Diffraction 2.4706 2.583 -- 146 15098 0.173 0.238 -- 98.0
X Ray Diffraction 2.583 2.7191 -- 147 15157 0.1661 0.2193 -- 98.0
X Ray Diffraction 2.7191 2.8895 -- 146 15304 0.1582 0.2228 -- 99.0
X Ray Diffraction 2.8895 3.1125 -- 146 15367 0.1483 0.1932 -- 99.0
X Ray Diffraction 3.1125 3.4257 -- 150 15463 0.1364 0.1762 -- 100.0
X Ray Diffraction 3.4257 3.9212 -- 148 15427 0.1301 0.1767 -- 100.0
X Ray Diffraction 3.9212 4.9394 -- 149 15559 0.1161 0.1365 -- 100.0
X Ray Diffraction 4.9394 46.9162 -- 152 15645 0.1641 0.1917 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 29.2
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.073
f_dihedral_angle_d 14.086
f_angle_d 1.061
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 16864
Nucleic Acid Atoms 0
Heterogen Atoms 264
Solvent Atoms 2665

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
MOLREP Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
MOLREP model building