X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.5
Details pH 7.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 66.43 α = 90
b = 90.36 β = 90
c = 98.47 γ = 90
Symmetry
Space Group I 2 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- 2004-12-09
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.67 49.24 99.5 0.04 -- -- 5.6 -- 34725 -- 2.0 15.94
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.67 1.76 97.4 0.17 -- -- 4.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.67 22.74 -- 0.0 -- 34559 1742 99.5 -- 0.1811 0.1797 0.2096 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.67 1.72 -- 133 2757 0.2769 0.2839 -- 99.5
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 17.7
Anisotropic B[1][1] 3.0322
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.3156
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.7167
RMS Deviations
Key Refinement Restraint Deviation
t_omega_torsion 3.69
t_angle_deg 1.04
t_bond_d 0.01
t_other_torsion 15.02
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.184
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1628
Nucleic Acid Atoms 0
Heterogen Atoms 31
Solvent Atoms 297

Software

Software
Software Name Purpose
BUSTER refinement version: 2.9.7
PROCESS data reduction
XDS data scaling
AMoRE phasing