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X-RAY DIFFRACTION
Materials and Methods page
2YI5
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details pH 7
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 70.87 α = 90
    b = 90.31 β = 90
    c = 88.44 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2009-05-27
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength 0.9796
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.5
    Resolution(Low) 56
    Number Reflections(Observed) 10079
    Percent Possible(Observed) 99.6
    R Merge I(Observed) 0.08
    B(Isotropic) From Wilson Plot 49.7
    Redundancy 3.4
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.64
    Percent Possible(All) 99.6
    R Merge I(Observed) 0.52
    Mean I Over Sigma(Observed) 2.3
    Redundancy 3.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5
    Resolution(Low) 47.163
    Cut-off Sigma(F) 1.31
    Number of Reflections(Observed) 10079
    Number of Reflections(R-Free) 904
    Percent Reflections(Observed) 98.97
    R-Factor(Observed) 0.1993
    R-Work 0.1949
    R-Free 0.2893
     
    Temperature Factor Modeling
    Mean Isotropic B Value 43.2
    Anisotropic B[1][1] -3.3036
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 16.0089
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -12.7053
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5001
    Shell Resolution(Low) 2.6567
    Number of Reflections(R-Free) 181
    Number of Reflections(R-Work) 2899
    R-Factor(R-Work) 0.2717
    R-Factor(R-Free) 0.3432
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6567
    Shell Resolution(Low) 2.8618
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 3020
    R-Factor(R-Work) 0.2371
    R-Factor(R-Free) 0.3344
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8618
    Shell Resolution(Low) 3.1497
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2987
    R-Factor(R-Work) 0.2089
    R-Factor(R-Free) 0.28
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1497
    Shell Resolution(Low) 3.6054
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2990
    R-Factor(R-Work) 0.1745
    R-Factor(R-Free) 0.2864
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6054
    Shell Resolution(Low) 4.5418
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 3012
    R-Factor(R-Work) 0.1479
    R-Factor(R-Free) 0.2355
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5418
    Shell Resolution(Low) 47.1717
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2952
    R-Factor(R-Work) 0.1792
    R-Factor(R-Free) 0.2551
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.007
    f_chiral_restr 0.081
    f_dihedral_angle_d 18.967
    f_angle_d 1.354
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1616
    Nucleic Acid Atoms 0
    Heterogen Atoms 24
    Solvent Atoms 107
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER