POP-OUT | CLOSE

An Information Portal to 109093 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
2YI0
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details pH 7
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 65.43 α = 90
    b = 89.32 β = 90
    c = 100.09 γ = 90
     
    Space Group
    Space Group Name:    I 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2009-05-27
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength 0.9796
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.6
    Resolution(Low) 53
    Number Reflections(Observed) 38928
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.06
    B(Isotropic) From Wilson Plot 20.033
    Redundancy 4.1
     
    High Resolution Shell Details
    Resolution(High) 1.6
    Resolution(Low) 1.69
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.32
    Mean I Over Sigma(Observed) 4.0
    Redundancy 3.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.6
    Resolution(Low) 66.67
    Number of Reflections(Observed) 36971
    Number of Reflections(R-Free) 1950
    Percent Reflections(Observed) 99.71
    R-Factor(Observed) 0.19898
    R-Work 0.19712
    R-Free 0.2339
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 18.631
    Anisotropic B[1][1] -0.48
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.49
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.01
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6
    Shell Resolution(Low) 1.642
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2694
    R-Factor(R-Work) 0.406
    R-Factor(R-Free) 0.455
    Percent Reflections(Observed) 99.82
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 6.129
    r_scbond_it 4.0
    r_mcangle_it 2.704
    r_mcbond_it 1.71
    r_gen_planes_refined 0.015
    r_chiral_restr 0.191
    r_dihedral_angle_4_deg 19.416
    r_dihedral_angle_3_deg 12.88
    r_dihedral_angle_2_deg 34.688
    r_dihedral_angle_1_deg 6.47
    r_angle_refined_deg 2.688
    r_bond_refined_d 0.032
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1624
    Nucleic Acid Atoms 0
    Heterogen Atoms 23
    Solvent Atoms 303
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0066
     
    Software
    refinement REFMAC version: 5.5.0066
    model building PHASER