X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6.5
Details pH 6.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.04 α = 90
b = 90.35 β = 90
c = 98.86 γ = 90
Symmetry
Space Group I 2 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE (R-AXIS IV) RIGAKU OSMIC BLUE MIRRORS 2003-05-12
Diffraction Radiation
Monochromator Protocol
CU FILTER SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH3R -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 67.42 97.3 0.06 -- -- 6.0 -- 24405 -- 1.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.2 2.26 97.6 0.45 -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.2 67.42 -- -- -- 14405 767 97.31 -- 0.25108 0.24588 0.34927 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2 2.257 -- 54 1034 0.423 0.45 -- 97.58
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 51.076
Anisotropic B[1][1] 0.6
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.42
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.02
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 3.485
r_scbond_it 2.147
r_mcangle_it 1.399
r_mcbond_it 0.757
r_gen_planes_refined 0.006
r_chiral_restr 0.107
r_dihedral_angle_4_deg 19.298
r_dihedral_angle_3_deg 19.622
r_dihedral_angle_2_deg 38.361
r_dihedral_angle_1_deg 7.418
r_angle_refined_deg 1.611
r_bond_refined_d 0.014
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1637
Nucleic Acid Atoms 0
Heterogen Atoms 26
Solvent Atoms 166

Software

Computing
Computing Package Purpose
DTREK Data Reduction (intensity integration)
DTREK Data Reduction (data scaling)
AMORE Structure Solution
REFMAC 5.5.0109 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0109 refinement
AMORE model building