X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6.5
Details pH 6.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 66.28 α = 90
b = 89.26 β = 90
c = 100.55 γ = 90
Symmetry
Space Group I 2 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE (R-AXIS IV) RIGAKU OSMIC BLUE MIRRORS 2005-04-04
Diffraction Radiation
Monochromator Protocol
CU FILTER SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH3R -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.4 67.42 99.2 0.13 -- -- 3.2 -- 11341 -- 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.4 2.49 98.9 0.39 -- 1.8 3.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.4 67.42 -- -- -- 11341 569 99.12 -- 0.22739 0.22326 0.31094 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.4 2.462 -- 47 812 0.292 0.341 -- 98.62
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 46.281
Anisotropic B[1][1] -0.93
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.25
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.32
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 3.686
r_scbond_it 2.109
r_mcangle_it 1.552
r_mcbond_it 0.81
r_gen_planes_refined 0.006
r_chiral_restr 0.099
r_dihedral_angle_4_deg 23.613
r_dihedral_angle_3_deg 17.879
r_dihedral_angle_2_deg 37.843
r_dihedral_angle_1_deg 6.471
r_angle_refined_deg 1.698
r_bond_refined_d 0.018
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1628
Nucleic Acid Atoms 0
Heterogen Atoms 11
Solvent Atoms 161

Software

Computing
Computing Package Purpose
D*TREK Data Reduction (intensity integration)
D*TREK Data Reduction (data scaling)
AMORE Structure Solution
REFMAC 5.5.0109 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0109 refinement
AMORE model building