X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details pH 7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.42 α = 110.99
b = 78.87 β = 90.27
c = 86.61 γ = 92.87
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD (SX-165) MARRESEARCH -- 2010-11-25
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.3 -- BESSY 14.3

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.09 48.33 96.2 0.11 -- -- 2.2 -- 29712 -- 0.0 56.1
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.09 3.21 92.5 0.43 -- 2.1 2.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.1 48.33 -- -- -- 28232 1493 98.46 -- 0.22672 0.22509 0.25616 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.1 3.18 -- 106 2091 0.294 0.335 -- 98.48
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 75.959
Anisotropic B[1][1] 5.37
Anisotropic B[1][2] -0.18
Anisotropic B[1][3] -0.37
Anisotropic B[2][2] -3.44
Anisotropic B[2][3] -2.55
Anisotropic B[3][3] -3.77
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 2.013
r_scbond_it 1.12
r_mcangle_it 0.821
r_mcbond_it 0.437
r_gen_planes_refined 0.006
r_chiral_restr 0.096
r_dihedral_angle_4_deg 17.01
r_dihedral_angle_3_deg 17.957
r_dihedral_angle_2_deg 39.159
r_dihedral_angle_1_deg 6.597
r_angle_refined_deg 1.439
r_bond_refined_d 0.012
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11265
Nucleic Acid Atoms 0
Heterogen Atoms 399
Solvent Atoms 94

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
REFMAC 5.5.0110 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0110 refinement