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X-RAY DIFFRACTION
Materials and Methods page
2Y6R
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details pH 7
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 67.42 α = 110.99
    b = 78.87 β = 90.27
    c = 86.61 γ = 92.87
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (SX-165)
    Type MARRESEARCH
    Collection Date 2010-11-25
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.3
    Wavelength 0.918
    Site BESSY
    Beamline 14.3
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 3.09
    Resolution(Low) 48.33
    Number Reflections(Observed) 29712
    Percent Possible(Observed) 96.2
    R Merge I(Observed) 0.11
    B(Isotropic) From Wilson Plot 56.1
    Redundancy 2.2
     
    High Resolution Shell Details
    Resolution(High) 3.09
    Resolution(Low) 3.21
    Percent Possible(All) 92.5
    R Merge I(Observed) 0.43
    Mean I Over Sigma(Observed) 2.1
    Redundancy 2.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.1
    Resolution(Low) 48.33
    Number of Reflections(Observed) 28232
    Number of Reflections(R-Free) 1493
    Percent Reflections(Observed) 98.46
    R-Factor(Observed) 0.22672
    R-Work 0.22509
    R-Free 0.25616
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 75.959
    Anisotropic B[1][1] 5.37
    Anisotropic B[1][2] -0.18
    Anisotropic B[1][3] -0.37
    Anisotropic B[2][2] -3.44
    Anisotropic B[2][3] -2.55
    Anisotropic B[3][3] -3.77
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1
    Shell Resolution(Low) 3.18
    Number of Reflections(R-Free) 106
    Number of Reflections(R-Work) 2091
    R-Factor(R-Work) 0.294
    R-Factor(R-Free) 0.335
    Percent Reflections(Observed) 98.48
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.013
    r_scbond_it 1.12
    r_mcangle_it 0.821
    r_mcbond_it 0.437
    r_gen_planes_refined 0.006
    r_chiral_restr 0.096
    r_dihedral_angle_4_deg 17.01
    r_dihedral_angle_3_deg 17.957
    r_dihedral_angle_2_deg 39.159
    r_dihedral_angle_1_deg 6.597
    r_angle_refined_deg 1.439
    r_bond_refined_d 0.012
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 11265
    Nucleic Acid Atoms 0
    Heterogen Atoms 399
    Solvent Atoms 94
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement REFMAC 5.5.0110
     
    Software
    refinement REFMAC version: 5.5.0110