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X-RAY DIFFRACTION
Materials and Methods page
2Y6Q
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details pH 7
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 68.7 α = 111.1
    b = 79.96 β = 90.41
    c = 88 γ = 92.96
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (SX-165)
    Type MARRESEARCH
    Collection Date 2010-11-23
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.3
    Wavelength 0.918
    Site BESSY
    Beamline 14.3
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.37
    Resolution(Low) 51.98
    Number Reflections(Observed) 66166
    Percent Possible(Observed) 93.5
    R Merge I(Observed) 0.09
    B(Isotropic) From Wilson Plot 49.7
    Redundancy 2.6
     
    High Resolution Shell Details
    Resolution(High) 2.37
    Resolution(Low) 2.5
    Percent Possible(All) 69.6
    R Merge I(Observed) 0.49
    Mean I Over Sigma(Observed) 2.1
    Redundancy 2.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.37
    Resolution(Low) 51.98
    Number of Reflections(Observed) 62850
    Number of Reflections(R-Free) 3314
    Percent Reflections(Observed) 93.46
    R-Factor(Observed) 0.21937
    R-Work 0.21838
    R-Free 0.23776
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 44.735
    Anisotropic B[1][1] 3.38
    Anisotropic B[1][2] -0.02
    Anisotropic B[1][3] -0.83
    Anisotropic B[2][2] 0.4
    Anisotropic B[2][3] 0.4
    Anisotropic B[3][3] -3.52
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.37
    Shell Resolution(Low) 2.431
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 3158
    R-Factor(R-Work) 0.372
    R-Factor(R-Free) 0.349
    Percent Reflections(Observed) 63.26
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.479
    r_scbond_it 2.179
    r_mcangle_it 1.322
    r_mcbond_other 0.172
    r_mcbond_it 0.711
    r_gen_planes_other 0.003
    r_gen_planes_refined 0.008
    r_chiral_restr 0.128
    r_dihedral_angle_4_deg 20.016
    r_dihedral_angle_3_deg 17.537
    r_dihedral_angle_2_deg 37.437
    r_dihedral_angle_1_deg 6.909
    r_angle_other_deg 1.147
    r_angle_refined_deg 1.825
    r_bond_other_d 0.004
    r_bond_refined_d 0.02
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 11346
    Nucleic Acid Atoms 0
    Heterogen Atoms 396
    Solvent Atoms 197
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement REFMAC 5.5.0110
     
    Software
    refinement REFMAC version: 5.5.0110