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X-RAY DIFFRACTION
Materials and Methods page
2XWB
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.7
    Details PH 7.7
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 108.28 α = 95.47
    b = 135.77 β = 110.69
    c = 149.98 γ = 113.39
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2009-06-12
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID23-1
    Wavelength 0.87260
    Site ESRF
    Beamline ID23-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.5
    Resolution(High) 3.5
    Resolution(Low) 67.42
    Number Reflections(Observed) 88224
    Percent Possible(Observed) 99.2
    R Merge I(Observed) 0.14
    B(Isotropic) From Wilson Plot 83.14
    Redundancy 3.3
     
    High Resolution Shell Details
    Resolution(High) 3.5
    Resolution(Low) 3.69
    Percent Possible(All) 99.0
    R Merge I(Observed) 0.63
    Mean I Over Sigma(Observed) 2.2
    Redundancy 3.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.49
    Resolution(Low) 65.95
    Cut-off Sigma(F) 2.01
    Number of Reflections(Observed) 88180
    Number of Reflections(R-Free) 4427
    Percent Reflections(Observed) 98.6
    R-Factor(Observed) 0.192
    R-Work 0.189
    R-Free 0.244
     
    Temperature Factor Modeling
    Mean Isotropic B Value 114.37
    Anisotropic B[1][1] -10.2414
    Anisotropic B[1][2] 11.8086
    Anisotropic B[1][3] -8.8541
    Anisotropic B[2][2] -4.0625
    Anisotropic B[2][3] -5.1292
    Anisotropic B[3][3] 2.7506
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.493
    Shell Resolution(Low) 3.5327
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2283
    R-Factor(R-Work) 0.3002
    R-Factor(R-Free) 0.3737
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5327
    Shell Resolution(Low) 3.5743
    Number of Reflections(R-Free) 189
    Number of Reflections(R-Work) 2797
    R-Factor(R-Work) 0.2855
    R-Factor(R-Free) 0.3461
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5743
    Shell Resolution(Low) 3.6178
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2787
    R-Factor(R-Work) 0.2712
    R-Factor(R-Free) 0.3284
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6178
    Shell Resolution(Low) 3.6636
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2859
    R-Factor(R-Work) 0.2627
    R-Factor(R-Free) 0.3096
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6636
    Shell Resolution(Low) 3.7118
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2806
    R-Factor(R-Work) 0.2472
    R-Factor(R-Free) 0.3234
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7118
    Shell Resolution(Low) 3.7627
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2777
    R-Factor(R-Work) 0.2442
    R-Factor(R-Free) 0.3077
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7627
    Shell Resolution(Low) 3.8164
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2783
    R-Factor(R-Work) 0.2231
    R-Factor(R-Free) 0.2753
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8164
    Shell Resolution(Low) 3.8734
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2875
    R-Factor(R-Work) 0.2179
    R-Factor(R-Free) 0.2941
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8734
    Shell Resolution(Low) 3.9339
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2782
    R-Factor(R-Work) 0.2113
    R-Factor(R-Free) 0.2751
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9339
    Shell Resolution(Low) 3.9984
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2827
    R-Factor(R-Work) 0.2017
    R-Factor(R-Free) 0.2611
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9984
    Shell Resolution(Low) 4.0673
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2776
    R-Factor(R-Work) 0.1942
    R-Factor(R-Free) 0.224
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0673
    Shell Resolution(Low) 4.1413
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2823
    R-Factor(R-Work) 0.1829
    R-Factor(R-Free) 0.2633
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1413
    Shell Resolution(Low) 4.2209
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2800
    R-Factor(R-Work) 0.1707
    R-Factor(R-Free) 0.2586
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2209
    Shell Resolution(Low) 4.3071
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 2836
    R-Factor(R-Work) 0.167
    R-Factor(R-Free) 0.208
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3071
    Shell Resolution(Low) 4.4007
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2801
    R-Factor(R-Work) 0.1619
    R-Factor(R-Free) 0.248
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4007
    Shell Resolution(Low) 4.503
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2833
    R-Factor(R-Work) 0.1528
    R-Factor(R-Free) 0.1879
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.503
    Shell Resolution(Low) 4.6156
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2777
    R-Factor(R-Work) 0.1486
    R-Factor(R-Free) 0.2026
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6156
    Shell Resolution(Low) 4.7404
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2860
    R-Factor(R-Work) 0.1445
    R-Factor(R-Free) 0.219
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7404
    Shell Resolution(Low) 4.8798
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 2806
    R-Factor(R-Work) 0.1424
    R-Factor(R-Free) 0.2044
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8798
    Shell Resolution(Low) 5.0373
    Number of Reflections(R-Free) 180
    Number of Reflections(R-Work) 2775
    R-Factor(R-Work) 0.1419
    R-Factor(R-Free) 0.1869
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.0373
    Shell Resolution(Low) 5.2173
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2798
    R-Factor(R-Work) 0.1415
    R-Factor(R-Free) 0.1943
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.2173
    Shell Resolution(Low) 5.4261
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2815
    R-Factor(R-Work) 0.1524
    R-Factor(R-Free) 0.1947
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4261
    Shell Resolution(Low) 5.6729
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2810
    R-Factor(R-Work) 0.1593
    R-Factor(R-Free) 0.2222
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.6729
    Shell Resolution(Low) 5.9718
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2820
    R-Factor(R-Work) 0.1642
    R-Factor(R-Free) 0.217
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.9718
    Shell Resolution(Low) 6.3457
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2801
    R-Factor(R-Work) 0.168
    R-Factor(R-Free) 0.194
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.3457
    Shell Resolution(Low) 6.8351
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2838
    R-Factor(R-Work) 0.1725
    R-Factor(R-Free) 0.2532
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.8351
    Shell Resolution(Low) 7.5221
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2810
    R-Factor(R-Work) 0.1719
    R-Factor(R-Free) 0.2379
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.5221
    Shell Resolution(Low) 8.6085
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2808
    R-Factor(R-Work) 0.1682
    R-Factor(R-Free) 0.2388
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 8.6085
    Shell Resolution(Low) 10.8381
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2813
    R-Factor(R-Work) 0.1589
    R-Factor(R-Free) 0.188
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 10.8381
    Shell Resolution(Low) 65.9658
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2777
    R-Factor(R-Work) 0.22
    R-Factor(R-Free) 0.2491
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.057
    f_dihedral_angle_d 11.111
    f_angle_d 0.488
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 39033
    Nucleic Acid Atoms 0
    Heterogen Atoms 248
    Solvent Atoms 4
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) IMOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE: 1.5_2)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE: 1.5_2)
    model building PHASER