X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.7
Details PH 7.7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 108.28 α = 95.47
b = 135.77 β = 110.69
c = 149.98 γ = 113.39
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- 2009-06-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID23-1 -- ESRF ID23-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.5 67.42 99.2 0.14 -- -- 3.3 -- 88224 -- 3.5 83.14
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.5 3.69 99.0 0.63 -- 2.2 3.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.49 65.95 -- 2.01 -- 88180 4427 98.6 -- 0.192 0.189 0.244 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.493 3.5327 -- 148 2283 0.3002 0.3737 -- 84.0
X Ray Diffraction 3.5327 3.5743 -- 189 2797 0.2855 0.3461 -- 99.0
X Ray Diffraction 3.5743 3.6178 -- 148 2787 0.2712 0.3284 -- 99.0
X Ray Diffraction 3.6178 3.6636 -- 131 2859 0.2627 0.3096 -- 99.0
X Ray Diffraction 3.6636 3.7118 -- 129 2806 0.2472 0.3234 -- 99.0
X Ray Diffraction 3.7118 3.7627 -- 149 2777 0.2442 0.3077 -- 99.0
X Ray Diffraction 3.7627 3.8164 -- 147 2783 0.2231 0.2753 -- 99.0
X Ray Diffraction 3.8164 3.8734 -- 137 2875 0.2179 0.2941 -- 99.0
X Ray Diffraction 3.8734 3.9339 -- 148 2782 0.2113 0.2751 -- 99.0
X Ray Diffraction 3.9339 3.9984 -- 140 2827 0.2017 0.2611 -- 99.0
X Ray Diffraction 3.9984 4.0673 -- 133 2776 0.1942 0.224 -- 99.0
X Ray Diffraction 4.0673 4.1413 -- 147 2823 0.1829 0.2633 -- 99.0
X Ray Diffraction 4.1413 4.2209 -- 145 2800 0.1707 0.2586 -- 99.0
X Ray Diffraction 4.2209 4.3071 -- 161 2836 0.167 0.208 -- 99.0
X Ray Diffraction 4.3071 4.4007 -- 142 2801 0.1619 0.248 -- 99.0
X Ray Diffraction 4.4007 4.503 -- 129 2833 0.1528 0.1879 -- 99.0
X Ray Diffraction 4.503 4.6156 -- 136 2777 0.1486 0.2026 -- 99.0
X Ray Diffraction 4.6156 4.7404 -- 135 2860 0.1445 0.219 -- 99.0
X Ray Diffraction 4.7404 4.8798 -- 167 2806 0.1424 0.2044 -- 99.0
X Ray Diffraction 4.8798 5.0373 -- 180 2775 0.1419 0.1869 -- 99.0
X Ray Diffraction 5.0373 5.2173 -- 154 2798 0.1415 0.1943 -- 99.0
X Ray Diffraction 5.2173 5.4261 -- 152 2815 0.1524 0.1947 -- 99.0
X Ray Diffraction 5.4261 5.6729 -- 159 2810 0.1593 0.2222 -- 99.0
X Ray Diffraction 5.6729 5.9718 -- 144 2820 0.1642 0.217 -- 99.0
X Ray Diffraction 5.9718 6.3457 -- 133 2801 0.168 0.194 -- 99.0
X Ray Diffraction 6.3457 6.8351 -- 151 2838 0.1725 0.2532 -- 99.0
X Ray Diffraction 6.8351 7.5221 -- 142 2810 0.1719 0.2379 -- 99.0
X Ray Diffraction 7.5221 8.6085 -- 141 2808 0.1682 0.2388 -- 100.0
X Ray Diffraction 8.6085 10.8381 -- 160 2813 0.1589 0.188 -- 99.0
X Ray Diffraction 10.8381 65.9658 -- 150 2777 0.22 0.2491 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 114.37
Anisotropic B[1][1] -10.2414
Anisotropic B[1][2] 11.8086
Anisotropic B[1][3] -8.8541
Anisotropic B[2][2] -4.0625
Anisotropic B[2][3] -5.1292
Anisotropic B[3][3] 2.7506
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.002
f_chiral_restr 0.057
f_dihedral_angle_d 11.111
f_angle_d 0.488
f_bond_d 0.002
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 39033
Nucleic Acid Atoms 0
Heterogen Atoms 248
Solvent Atoms 4

Software

Computing
Computing Package Purpose
IMOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (PHENIX.REFINE: 1.5_2) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE: 1.5_2) refinement
PHASER model building