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An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
2XQJ
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details AMMONIUM SULFATE 2.1 M, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID 0.1 M, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K .
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 155.82 α = 90
    b = 155.82 β = 90
    c = 128.28 γ = 90
     
    Space Group
    Space Group Name:    I 4 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2009-12-07
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID23-1
    Wavelength 0.954
    Site ESRF
    Beamline ID23-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.4
    Resolution(Low) 49.3
    Number Reflections(Observed) 31042
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.08
    Redundancy 9.2
     
    High Resolution Shell Details
    Resolution(High) 2.4
    Resolution(Low) 2.5
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.39
    Mean I Over Sigma(Observed) 6.2
    Redundancy 9.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.4
    Resolution(Low) 49.27
    Number of Reflections(Observed) 29799
    Number of Reflections(R-Free) 1242
    Percent Reflections(Observed) 99.88
    R-Factor(Observed) 0.17002
    R-Work 0.16782
    R-Free 0.22291
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 39.695
    Anisotropic B[1][1] 1.82
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.82
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -3.63
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4
    Shell Resolution(Low) 2.462
    Number of Reflections(R-Free) 90
    Number of Reflections(R-Work) 2165
    R-Factor(R-Work) 0.203
    R-Factor(R-Free) 0.27
    Percent Reflections(Observed) 99.96
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 5.346
    r_scbond_it 3.313
    r_mcangle_it 1.944
    r_mcbond_it 1.054
    r_gen_planes_refined 0.009
    r_chiral_restr 0.139
    r_dihedral_angle_4_deg 19.91
    r_dihedral_angle_3_deg 17.44
    r_dihedral_angle_2_deg 35.793
    r_dihedral_angle_1_deg 6.884
    r_angle_refined_deg 1.976
    r_bond_refined_d 0.022
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4203
    Nucleic Acid Atoms 0
    Heterogen Atoms 161
    Solvent Atoms 346
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building MOLREP