POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
2WTJ
  •   Crystallization Hide
    Crystallization Experiments
    Details 0.1 M HEPES PH 7.5, 0.2 M MAGNESIUM NITRATE, 8-16% (W/V) PEG 3350
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 90.99 α = 90
    b = 90.99 β = 90
    c = 93.33 γ = 120
     
    Space Group
    Space Group Name:    P 32 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Details TOROIDAL ZERODUR MIRROR
    Collection Date 2008-10-31
     
    Diffraction Radiation
    Monochromator DIAMOND (111), GE(220)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-2
    Wavelength 0.9330
    Site ESRF
    Beamline ID14-2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.95
    Resolution(Low) 40.89
    Number Reflections(Observed) 26561
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.06
    B(Isotropic) From Wilson Plot 40.09
    Redundancy 8.69
     
    High Resolution Shell Details
    Resolution(High) 2.1
    Resolution(Low) 2.21
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.59
    Mean I Over Sigma(Observed) 1.26
    Redundancy 5.54
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.1
    Resolution(Low) 32.576
    Cut-off Sigma(F) 1.07
    Number of Reflections(Observed) 26561
    Number of Reflections(R-Free) 2565
    Percent Reflections(Observed) 99.98
    R-Factor(Observed) 0.1889
    R-Work 0.1874
    R-Free 0.2166
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 0.6341
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.6341
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.2683
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1
    Shell Resolution(Low) 2.1404
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2623
    R-Factor(R-Work) 0.2606
    R-Factor(R-Free) 0.2801
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1404
    Shell Resolution(Low) 2.1841
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2692
    R-Factor(R-Work) 0.2553
    R-Factor(R-Free) 0.2779
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1841
    Shell Resolution(Low) 2.2316
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.2463
    R-Factor(R-Free) 0.3052
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2316
    Shell Resolution(Low) 2.2835
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2698
    R-Factor(R-Work) 0.231
    R-Factor(R-Free) 0.2847
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2835
    Shell Resolution(Low) 2.3406
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2603
    R-Factor(R-Work) 0.2183
    R-Factor(R-Free) 0.2592
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3406
    Shell Resolution(Low) 2.4038
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.202
    R-Factor(R-Free) 0.2275
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4038
    Shell Resolution(Low) 2.4745
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 2685
    R-Factor(R-Work) 0.212
    R-Factor(R-Free) 0.2423
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4745
    Shell Resolution(Low) 2.5544
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2659
    R-Factor(R-Work) 0.2012
    R-Factor(R-Free) 0.2354
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5544
    Shell Resolution(Low) 2.6456
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2647
    R-Factor(R-Work) 0.225
    R-Factor(R-Free) 0.3238
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6456
    Shell Resolution(Low) 2.7515
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2675
    R-Factor(R-Work) 0.2117
    R-Factor(R-Free) 0.288
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7515
    Shell Resolution(Low) 2.8767
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2667
    R-Factor(R-Work) 0.2123
    R-Factor(R-Free) 0.2332
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8767
    Shell Resolution(Low) 3.0282
    Number of Reflections(R-Free) 168
    Number of Reflections(R-Work) 2663
    R-Factor(R-Work) 0.2105
    R-Factor(R-Free) 0.2605
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0282
    Shell Resolution(Low) 3.2178
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2657
    R-Factor(R-Work) 0.2032
    R-Factor(R-Free) 0.2554
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2178
    Shell Resolution(Low) 3.466
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2650
    R-Factor(R-Work) 0.1881
    R-Factor(R-Free) 0.1968
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.466
    Shell Resolution(Low) 3.8143
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2680
    R-Factor(R-Work) 0.1647
    R-Factor(R-Free) 0.2075
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8143
    Shell Resolution(Low) 4.3651
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2654
    R-Factor(R-Work) 0.1408
    R-Factor(R-Free) 0.1604
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3651
    Shell Resolution(Low) 5.4953
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.1419
    R-Factor(R-Free) 0.1388
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4953
    Shell Resolution(Low) 32.5804
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2647
    R-Factor(R-Work) 0.1751
    R-Factor(R-Free) 0.1882
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.056
    f_dihedral_angle_d 17.341
    f_angle_d 0.871
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2245
    Nucleic Acid Atoms 0
    Heterogen Atoms 48
    Solvent Atoms 248
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER